CGDB Gene Information

Tag Content
CGDB ID CGD-EqC-020994
Uniprot Accession F7AU00; F7AU00; F7AU00_HORSE
Protein Name Uncharacterized protein
Gene Name PER1
Ensembl Information ENSECAT00000014760; ENSECAP000000118
Organism Equus caballus
NCBI Taxa ID 9796
Circadian Information
Evidence Phase Amplitude
(FOLD)		 Sentence Tissue/Cell Data type PMID
Peak Trough External
condition
Small-scale CT 0 CT 12 DD2 5.80 The expression of Per1 is cyclic in equine skeletal muscle over 24 h in constant darkness. gluteal muscles Small-scale [1]
Protein Sequence
(Fasta)		 PPCASIVASP PSLFSCPPHG PDMSSSLEGA DGGGDPRPGE SFCPGEAPSP GPPHHRPCPG 60
PSLADDTDAN SNGSSGNESN GPESRGASQR SSHSSSSGNG KDSALLETTE SSKSTNSQSP 120
SPPSSSIAYS LLSASSEQDN PSTSGCSSEQ SARARTQKEL MMALRELKLR LPPERRGKGR 180
SGTLATLQYA LACVKQVQAN QEYYQQWSLE EGEACAMDMS TYSLEELEHI TSEYTLRNQD 240
TFSVAVSFLT GRIVYISEQA GILLHCKRDV FRGARFSELL APQDVGVFYG STAPSRLPTW 300
GTGASAGSGL KDFTQEKSVF CRIRGGPDWD LGPRYQPFRL TPYVTKIRIS DAAPAQPCCL 360
LIAERIHSGY EAPRIPPDKR IFTTRHTPSC LFQDVDERAA PLLGYLPQDL LGAPVLLFLH 420
PEDRPLMLAI HKKILQLAGQ PFDHSPIRFC ARNGEYVTMD TSWAGFVHPW SRKVAFVLGR 480
HKVRTAPLNE DVFTPPAPSP ALSLDSDIQE LSEQIHRLLL QPVHSPSPSP SGLCGVGPVT 540
SPGPLLSPGS SSDSNGGDAE GPGPPVPVTF QQICKDVHLV KHQGQQLFIE SRARPPPRPR 600
LPATGTFKAK TLPNQSPDPD LEAAPAPIQA PLALIPEEDE RKEASTCSYQ QINCLDSILR 660
YLESCNIPST TKRKCASSSS CTTSSASDDD KQRTGPLSVG AKKDPSAVLS GEGATLQKEP 720
VVGGTLSPLA LANKAESVVS VTSQCSFSST IVHVGDKKPP ESDIIMMEDL PGLAPGPAPS 780
PAPSPTVAPD PAPDAYRPVG LTKAVLSLHT QKEEQAFLSR FRDLGKLRGL DSSLAPSAPG 840
ERGCHHGPTP PGRRHHCRSK AKRSRHHQTP RAEAPCYVSH PSPVPPSAPW PPPPATTPFP 900
AVVQPYPLPV FSPQGSPQPL PPAPTSVPPA AFPAPLVTPM VALVLPNYLF PTPSSCPYGV 960
PQTPVEGPPT PASYSPSLSL PALAPSPPHR PDSPLFNSRC SSPLQLNLLQ LEEPLRVEGG 1020
AVAGGPGSSA GPPPPSEEAA EPEARLVEVT ESSNQDALSG SSDLLELLLQ EDSRSGTGSA 1080
ASGSLGSGLG SGSGSGSHEG GSTSASITRD SQSSHTSKYF GSIDSSEAEA GAAQARAEPG 1140
DQVIKYVLQD PIWLLMANAD QHVMMTYQVP SRDMASVLKQ DRERLRAMQK QQPRFSEDQR 1200
RELGAVHSWV RKGQLPRALD VMACVDCGSS TQDPGHPDDS LFSELDGLGL EPMEEGGGGG 1260
GDGGEGEGGE GARAQAGARV SSSQDLAMEE EEQGGNSSSL ALPATENGTS
Sequence Source Uniprot/ENA
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-AiM-053758Ailuropoda melanoleuca67.01 0.00e+00 1220.7
CGD-AnC-055229Anolis carolinensis50 0.00e+00 1017.7
CGD-AsM-064219Astyanax mexicanus45.69 0.00e+00 753.8
CGD-BoT-054337Bos taurus62.74 0.00e+00 1469.1
CGD-CaJ-048018Callithrix jacchus62.67 0.00e+00 1484.2
CGD-CaF-064770Canis familiaris62.28 0.00e+00 1461
CGD-CaP-029122Cavia porcellus59.45 0.00e+00 1390.6
CGD-ChS-031205Chlorocebus sabaeus62.29 0.00e+00 1487.6
CGD-DaR-072764Danio rerio43.65 0.00e+00 869.4
CGD-DaN-031719Dasypus novemcinctus60.85 0.00e+00 1443.7
CGD-DiO-053613Dipodomys ordii61.28 0.00e+00 1431.8
CGD-DrM-071117Drosophila melanogaster30.57 4.40e-27 120.9
CGD-ErE-072203Erinaceus europaeus63.61 0.00e+00 1372.8
CGD-FeC-031667Felis catus60.83 0.00e+00 1395.2
CGD-GaM-021007Gadus morhua45.94 0.00e+00 662.1
CGD-GaA-060790Gasterosteus aculeatus44.06 0.00e+00 885.9
CGD-GoG-062877Gorilla gorilla63.08 0.00e+00 1520
CGD-HoS-021038Homo sapiens (Human)62.54 0.00e+00 1492.6
CGD-IcT-062043Ictidomys tridecemlineatus62.58 0.00e+00 1515.4
CGD-LaC-070172Latimeria chalumnae58.53 0.00e+00 746.1
CGD-LeO-033639Lepisosteus oculatus56.68 0.00e+00 822.8
CGD-LoA-069322Loxodonta africana64.06 0.00e+00 1554.3
CGD-MaM-031836Macaca mulatta62.21 0.00e+00 1478.8
CGD-MaE-058204Macropus eugenii50.99 2.00e-146 517.3
CGD-MeT-071723Medicago truncatula25.42 3.14e-01 34.65
CGD-MeL-041695Melampsora laricipopulina28.81 1.51e-01 33.5
CGD-MiM-059459Microcebus murinus77.03 0.00e+00 783.1
CGD-MoD-062809Monodelphis domestica61.33 0.00e+00 1419.8
CGD-MuM-031636Mus musculus (Mouse)62.29 0.00e+00 1462.2
CGD-MuP-028062Mustela putorius furo60.14 0.00e+00 1379.4
CGD-MyL-066363Myotis lucifugus63.66 0.00e+00 1529.6
CGD-NoL-039781Nomascus leucogenys62.93 0.00e+00 1481.8
CGD-OcP-070087Ochotona princeps61.1 0.00e+00 1394.8
CGD-OrC-049700Oryctolagus cuniculus60.08 0.00e+00 1377.1
CGD-OrL-058700Oryzias latipes42.94 0.00e+00 914.1
CGD-OtG-066239Otolemur garnettii61.11 0.00e+00 1436.4
CGD-OvA-022197Ovis aries61.84 0.00e+00 1446.4
CGD-PaT-040966Pan troglodytes61.46 0.00e+00 1452.6
CGD-PaA-057182Papio anubis57.3 0.00e+00 932.9
CGD-PhN-062360Phaeosphaeria nodorum25 1.34e-01 32.73
CGD-PoA-067892Pongo abelii77.02 0.00e+00 705.3
CGD-PrC-056290Procavia capensis69.03 0.00e+00 1233.8
CGD-PtV-028552Pteropus vampyrus62.8 0.00e+00 1249.6
CGD-RaN-021793Rattus norvegicus66.8 0.00e+00 1524.6
CGD-SaH-069946Sarcophilus harrisii62.09 0.00e+00 1441
CGD-SoA-065078Sorex araneus66.67 0.00e+00 1615.5
CGD-SuS-066161Sus scrofa60.48 0.00e+00 1422.5
CGD-TaR-050668Takifugu rubripes45.43 0.00e+00 909.4
CGD-TaS-048703Tarsius syrichta60.97 0.00e+00 1341.6
CGD-TeN-071576Tetraodon nigroviridis47.72 0.00e+00 953.7
CGD-TrA-030951Triticum aestivum33.33 7.50e-02 31.96
CGD-TuB-071737Tupaia belangeri80.18 0.00e+00 682.2
CGD-TuT-061692Tursiops truncatus74.3 0.00e+00 1167.5
CGD-XeT-049391Xenopus tropicalis52.4 0.00e+00 756.9
CGD-XiM-048808Xiphophorus maculatus45.63 0.00e+00 949.5
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0031490--F:chromatin DNA binding
GO:0070888--F:E-box binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000989--F:transcription factor activity, transcription factor binding
GO:0032922--P:circadian regulation of gene expression
GO:0097167--P:circadian regulation of translation
GO:0043153--P:entrainment of circadian clock by photoperiod
GO:0043966--P:histone H3 acetylation
GO:0070932--P:histone H3 deacetylation
GO:0043967--P:histone H4 acetylation
GO:2000323--P:negative regulation of glucocorticoid receptor signaling pathway
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0042634--P:regulation of hair cycle
GO:0002028--P:regulation of sodium ion transport
GO:0051591--P:response to cAMP
Interpro

IPR000014--PAS
IPR013655--PAS_fold_3
IPR022728--Period_circadian-like_C
PROSITE

PS50112--PAS
Pfam

PF08447--PAS_3
PF12114--Period_C
SMART

SM00091--PAS