CGDB Gene Information

Tag Content
CGDB ID CGD-OrL-058700
Ensembl Accession ENSORLP00000008703.1
Protein Name per1a
Ensembl Information ENSORLG00000006929; ENSORLT00000008704
Organism Oryzias latipes
NCBI Taxa ID 8090
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 19 ZT 7 LD 2 muscle Predicted from orthologs H8ZXB9
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1a [Source:ZFIN;Acc:ZDB-GENE-011220-1](View all)
Protein Sequence
(Fasta)		 MSYDGCTSTP SSSTQGRVSG AHLKDQDGDP QGLSRQKADQ PGPHGSPQER GHADDGVSSM 60
EGGSRSGDQR GPSSDEMEGM SSGNDSGERE SHPRSCGHQS SRSSHSSSNG KDSGLMLESN 120
KSSNSQSLSP PGGSLAYSLL STSSEHDPPS TSGCSSDQSA RLQTQKELMK AIKELKLRLP 180
AERKGKGHSS TLSALKYALQ CVRQVRANKE YYHQWSVEEC HGCSLDLSAF TVEELDNITS 240
EYTLKNTDTF TMAVSFLSGR VVYVSPQGSS LLRCKPECLQ GTIFSELLAP QDVSTFYSST 300
APCRLPPWAS CIGSASPPAD CTQEKSMFCR ISADRVQGGE MRYYSFRLTP YQLTLRDSDA 360
AEPQPCCLLI AERVHSGYEA PRIPPDKRIF TTSHTPSCLF QEVDERAVPL LGYLPQDLVG 420
TPILLYIHPE DRPTMVAIHE KIFQFAGQPF DYSPLRMCAR NGEYLTIDTS WSSFVNPWSR 480
KVAFVIGRHK VRTSPLNEDV FTPQPGYETQ VTTPDIVQLS EQIHRVLVQP VHSSSSQGYS 540
SLGSSGSRGS RRSQQHHHSA SATSSSDSNG PAMEEAAAAS YKPMTFQQIC KDVHMVKTNG 600
QQVFIESRNR PPPRKHASTG DSGATKAANS DPIRDLIADV TQPSKALVPA QLVQKDATTG 660
YSYQQINCLD SIVRYLESCN IPNTVKRKCG SSSCTASSTS DDDKQPDAGC SNKGGSVNLV 720
GEPPTLPPLT MAAKAESVAS VTSQCSFSST IVHVGDKKPP ESDIVMEEAP VARVLTPSAV 780
TASTSTVGSI PPANAAVTPS VPASLPQTGQ PERESWLGLT KEVLSAHTQQ EEQAFLDRFK 840
DLSKLRVFDQ TASLAARCHV PAAPPRAYPG VRCSRDYPAA GGASAHRRGR GAKRLKHQES 900
SEQHAPLGVR GNRQDSRAGA APMPLSMPMG AAANSSSWPS AGSQASMPPA AFAPGMFPFY 960
PIYPPLQDLS RFPPTPTVPP MMALVVPNYM FPQMGAPISQ PGFPPGQFYN PNYTYFSPPP 1020
APVSTVFNPM PTQGNYPPSQ SSTAESCTPA DREGADSPLF HSRCSSPLNL LQLEESPINR 1080
LEVATALAAS QQATPSAQGS VPAGGQNSAN PRSSTDASKE NGEANESNQD AMSTSSDLLD 1140
LLLQEDSRSG TGSAASGSGS SGTRSSGSGS GSNGCSLSGT SGTSSSQGSH TSKYFGSIDS 1200
SENDHSRKQP PGGGGSSSAG GDGGEEQFIK CVLQDPIWLL MANTDDKVMM TYQLPVRDME 1260
TVLREDREAL RNLQKHQPRF TDEQKKELSQ VHPWVRTGRL PRAINISGCA GCKCPPAMPP 1320
DAPFDVEIHE MELCTVLKAQ EESSAPNDTE HLSENMYSGS H 1361
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus42.94 0.00e+00 914.1
CGD-GaM-021007Gadus morhua64.99 0.00e+00 924.9
CGD-HoS-021038Homo sapiens (Human)43.15 0.00e+00 912.5
CGD-OvA-022197Ovis aries42.8 0.00e+00 892.9
CGD-RaN-021793Rattus norvegicus43.77 0.00e+00 906.7
Gene Ontology

GO:0007165--signal transduction
GO:0004871--signal transducer activity
GO:0005515--protein binding