CGDB Gene Information

Tag Content
CGDB ID CGD-TaS-048703
Ensembl Accession ENSTSYP00000011365.1
Protein Name PER1
Ensembl Information ENSTSYG00000012377; ENSTSYT00000012387
Organism Tarsius syrichta
NCBI Taxa ID 9478
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 21 ZT 9 LD 6 duodenum Predicted from orthologs Q8QGQ8
ZT 2 ZT 18 LD 3.17 embryos Predicted from orthologs Q8QGQ8
ZT 6 ZT 18 LD 8 embryos Predicted from orthologs Q8QGQ8
CT 12 CT 0 DD1 3 granulosa cells Predicted from orthologs Q8QGQ8
ZT 3 ZT 18 LD 84.29 pineal glands Predicted from orthologs Q8QGQ8
ZT 23 ZT 11 LD 2.25 spleen Predicted from orthologs Q8QGQ8
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845](View all)
Protein Sequence
(Fasta)		 MSSPLEGADG GGDPRPGESF CSGGVPPPGP PQHRPCPGPS LADDTDANSN GSSGNESNGP 60
ESRGASQRSS HSSSSGNGKD SALLETTESS KSTNSQSPSP PSSSIAYSLL SASSEQDNPS 120
TSGCSSEQSA RARTQKELMT ALRELKLRLP PERRGKGRSG TLATLQYALA CVKQVQANQE 180
YYQQWSLEEG EPCAMDMSTY SLEELEHITS EYTLRNQDTF SVAVSFLTGR IVYISEQAPI 240
LLRCKRDVFR GARFSELLAP QDVGVFYGST APSRLPTWGT GASAGSGLKD FTQEKSVFCR 300
IGPDRDPGPR YQPFRLTPYV TKIRVSDGAS AQPCCLLIAE RIHSGYEAPR IPPDKRIFTT 360
RHTPSCLFQD VDERAAPLLG YLPQDLLGAP VLLFLHPEDR LLMLAIHKKX XXXXXXXXXX 420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XAPLNEDVFT PPAPSPAPSL 480
DTDIQELSEQ IHRLLLQPVH SPSPTGLCGV GPVTSPGPLH SPGSSSDSNG GDAEGLGPPA 540
PVTFQQICKD VHLVKHQGQQ LFIESRARPP PRPRLPATGT FKVKALPCQS PDLEPETAPV 600
PIQSTLTLAP EEAERKEASS CSYQQINCLD SILRYLESCN IPSTTKRKCA SSSSYTASSA 660
SDDDKQRTGP VPVGTKKDPS AVLSGEGSTS QKEPVVGGTL SPLTLANKAE SVVSVTSQCS 720
FSSTIVHVGD KKPPESDIIM MEDLPGPAQG PAPSPTPSPT VAPDPAPDTY RPVGLTKAVL 780
SLHTQKEEQA FLSRFRDLGR LRGLDGSSKA PSAPGERGCH HGPAPPGRRH HCRSKAKRSR 840
HHQSPRAEAP CCVSHPSPVP PSAPWPPPPA TNPFPAVVQP YPLPVFSPRG NPQPLPPAPT 900
SVPSAAFPAP LVTPMVALVL PNYLFPAPPS YPYGVPQTLA EGPPTPASHS PSPSLPPLPP 960
SPPHRPDSPL FNSRCSSPLQ LNLLQLEEPP RAEGIAVAGG PGSSAGPPPP SEEAAEPEAR 1020
LVEVTESSNQ DALSGSSDLL ELLLQEDSRS GTGSAASGSL GSGLGSGSGS GSHEAGSSAS 1080
ITRSSQSSHT SKYFGSVDSS EAEAGAAQAR AEPGDQVIKY VLQDPIWLLM ANADQRVMMT 1140
YQVPSRDMTS VLKQDRERLR AMQKQQPRFS EDQRRELGAV HSWVRKGQLP RALDVMACVD 1200
CGSSTQDPGH HDDPLFSELD GLGLEPMEEG GG 1232
Nucleotide Sequence
(Fasta)		 ATGAGTAGCC CCCTAGAAGG GGCTGATGGG GGAGGGGACC CCAGGCCTGG AGAATCCTTT 60
TGTTCGGGAG GAGTTCCACC CCCTGGGCCC CCACAACACC GACCTTGCCC AGGACCCAGC 120
TTGGCCGATG ACACCGATGC CAACAGCAAT GGTTCAAGTG GCAATGAGTC TAATGGGCCT 180
GAGTCCAGGG GTGCATCTCA GCGGAGCTCC CATAGCTCCT CATCTGGCAA TGGCAAGGAC 240
TCAGCTCTGC TGGAGACCAC TGAGAGCAGC AAGAGCACAA ACTCTCAGAG CCCATCCCCA 300
CCCAGCAGCT CCATTGCCTA CAGCCTCCTG AGTGCCAGCT CAGAGCAGGA CAACCCATCT 360
ACTAGTGGCT GCAGCAGTGA ACAGTCAGCC CGGGCGAGGA CCCAAAAGGA ACTGATGACA 420
GCACTTCGGG AGCTCAAGCT TCGACTGCCA CCAGAGCGCC GAGGCAAGGG CCGCTCTGGG 480
ACCCTGGCCA CACTACAGTA TGCGCTAGCC TGTGTCAAGC AGGTGCAGGC CAACCAGGAA 540
TACTACCAAC AGTGGAGCCT GGAGGAAGGT GAGCCTTGCG CCATGGACAT GTCCACCTAC 600
AGCCTAGAGG AGCTGGAGCA CATTACATCT GAATACACGC TTCGCAACCA GGATACCTTT 660
TCAGTGGCTG TCTCCTTCCT GACTGGCCGA ATTGTCTACA TTTCGGAGCA GGCACCCATC 720
CTGCTGCGTT GCAAGCGGGA TGTCTTCCGA GGTGCCCGCT TCTCAGAGCT TTTGGCTCCC 780
CAGGATGTGG GTGTCTTCTA TGGTTCCACT GCCCCGTCTC GTCTGCCCAC CTGGGGCACT 840
GGAGCCTCAG CAGGCTCAGG CCTTAAGGAT TTCACCCAGG AGAAGTCTGT TTTCTGCCGT 900
ATCGGTCCTG ACCGGGATCC AGGGCCTCGG TACCAGCCAT TCCGCCTAAC CCCATATGTG 960
ACCAAGATCC GGGTCTCAGA TGGGGCCTCT GCACAGCCGT GCTGCCTGCT CATTGCAGAA 1020
CGCATCCACT CGGGTTACGA AGCTCCCCGC ATTCCCCCCG ACAAGAGGAT CTTCACCACA 1080
CGGCACACAC CCAGCTGCCT CTTCCAGGAT GTGGATGAAA GGGCTGCCCC ACTGCTGGGC 1140
TATCTGCCCC AGGACCTCCT GGGAGCCCCA GTGCTCCTGT TCCTGCATCC TGAGGACCGA 1200
CTCCTCATGC TGGCCATTCA CAAGAAGANN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1260
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1320
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1380
NNAGCACCCC TGAATGAGGA CGTGTTCACT CCCCCGGCTC CCAGTCCAGC CCCATCCCTG 1440
GACACTGATA TCCAGGAGCT ATCAGAACAG ATCCACCGGC TGCTGTTGCA GCCTGTGCAC 1500
AGCCCCAGCC CCACGGGACT CTGTGGAGTT GGCCCTGTGA CATCCCCAGG CCCTCTTCAC 1560
AGCCCTGGCT CCTCCAGTGA TAGCAATGGG GGTGATGCTG AGGGGCTTGG GCCTCCTGCT 1620
CCGGTGACTT TCCAGCAGAT CTGTAAAGAT GTGCATCTGG TGAAGCACCA GGGGCAGCAG 1680
CTTTTTATTG AGTCTCGGGC CCGGCCCCCA CCGCGACCTC GCCTTCCTGC TACAGGCACA 1740
TTCAAGGTCA AGGCCCTTCC CTGCCAATCC CCAGACTTAG AGCCTGAGAC GGCTCCTGTT 1800
CCAATCCAGT CCACACTAAC CTTGGCCCCT GAGGAGGCCG AGAGGAAAGA AGCCTCCAGC 1860
TGCTCCTACC AGCAAATCAA CTGTCTGGAC AGTATCCTCA GGTACCTGGA AAGCTGCAAC 1920
ATCCCCAGCA CAACCAAGCG TAAATGTGCC TCCTCTTCTT CCTACACTGC CTCCTCAGCC 1980
TCTGATGATG ACAAGCAGAG GACAGGTCCA GTCCCTGTGG GGACCAAGAA AGATCCGTCG 2040
GCAGTGCTGT CTGGGGAGGG GTCCACTTCG CAGAAGGAGC CAGTGGTGGG AGGCACCCTG 2100
AGCCCGCTCA CCCTGGCCAA TAAGGCGGAG AGCGTGGTGT CTGTCACCAG TCAGTGTAGC 2160
TTCAGCTCCA CCATCGTTCA TGTGGGAGAC AAGAAGCCCC CGGAGTCGGA CATCATCATG 2220
ATGGAGGACC TGCCTGGCCC AGCCCAAGGC CCAGCCCCCA GCCCGACCCC CAGCCCCACA 2280
GTAGCCCCTG ACCCAGCACC AGATACCTAC CGTCCAGTGG GCCTGACCAA GGCCGTGCTG 2340
TCCCTGCACA CACAGAAGGA AGAGCAAGCC TTCCTCAGCC GCTTCCGAGA TCTTGGCAGG 2400
CTGCGTGGAC TTGACGGCTC TTCCAAGGCC CCCTCAGCCC CTGGCGAGCG AGGCTGCCAT 2460
CATGGCCCTG CACCCCCTGG CCGCCGACAC CACTGCCGAT CCAAAGCCAA GCGCTCACGC 2520
CACCACCAGA GCCCCCGGGC CGAAGCCCCC TGCTGTGTCT CACACCCCTC ACCTGTGCCA 2580
CCCTCTGCTC CCTGGCCCCC CCCACCAGCT ACTAACCCAT TCCCAGCAGT GGTCCAGCCC 2640
TACCCCCTTC CAGTGTTCTC CCCACGAGGA AACCCCCAGC CTCTTCCCCC TGCCCCCACA 2700
TCTGTGCCCT CTGCTGCTTT CCCTGCCCCT CTTGTAACCC CAATGGTGGC CTTGGTACTC 2760
CCTAACTATT TGTTTCCTGC TCCACCCAGC TATCCCTATG GGGTACCCCA GACCCTTGCT 2820
GAGGGGCCTC CTACTCCTGC CTCTCACTCC CCCTCTCCAT CCCTGCCACC ACTGCCCCCC 2880
AGCCCTCCCC ACCGCCCAGA CTCTCCACTG TTCAACTCGA GATGCAGCTC CCCGCTCCAG 2940
CTAAATCTGC TGCAGCTTGA GGAGCCCCCC CGTGCTGAGG GGATTGCTGT TGCAGGGGGC 3000
CCTGGGAGCA GTGCTGGGCC CCCACCTCCC AGTGAGGAGG CTGCTGAGCC AGAGGCCAGA 3060
CTGGTGGAGG TAACTGAGTC CTCCAATCAG GACGCGCTTT CTGGCTCCAG TGATCTCCTT 3120
GAACTGCTGC TGCAAGAAGA CTCTCGCTCT GGCACAGGCT CTGCAGCCTC AGGCTCCTTG 3180
GGCTCTGGTT TGGGCTCTGG GTCTGGTTCA GGCTCCCATG AGGCGGGCAG CTCAGCCAGC 3240
ATCACCCGCA GCAGTCAGAG CAGCCACACA AGCAAATACT TTGGCAGCGT TGACTCTTCT 3300
GAGGCTGAGG CTGGGGCTGC TCAGGCCAGG GCTGAGCCTG GGGACCAGGT CATTAAATAT 3360
GTGCTTCAGG ATCCCATTTG GCTGCTCATG GCCAATGCTG ACCAGCGTGT CATGATGACC 3420
TACCAAGTGC CCTCCAGGGA CATGACCTCT GTGCTGAAGC AGGACCGGGA ACGGCTCCGG 3480
GCAATGCAGA AACAGCAGCC TCGGTTCTCC GAGGACCAGC GGCGAGAACT GGGTGCTGTA 3540
CACTCCTGGG TCCGGAAGGG CCAGCTGCCT CGGGCTCTCG ATGTGATGGC CTGTGTGGAC 3600
TGTGGTAGCA GCACCCAAGA CCCTGGCCAC CATGATGACC CACTCTTCTC AGAGCTGGAT 3660
GGACTGGGCC TGGAGCCCAT GGAGGAGGGT GGAGGC 3696
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus60.97 0.00e+00 1341.6
CGD-GaG-021834Gallus gallus37.56 8.00e-145 511.5
CGD-HoS-021038Homo sapiens (Human)61.59 0.00e+00 1376.3
CGD-OvA-022197Ovis aries60.11 0.00e+00 1327.4
CGD-RaN-021793Rattus norvegicus60.11 0.00e+00 1328.5
Gene Ontology

GO:0097167--circadian regulation of translation
GO:0043153--entrainment of circadian clock by photoperiod
GO:0009416--response to light stimulus
GO:2000323--negative regulation of glucocorticoid receptor signaling pathway
GO:0042752--regulation of circadian rhythm
GO:0002028--regulation of sodium ion transport
GO:0031490--chromatin DNA binding
GO:0000976--transcription regulatory region sequence-specific DNA binding
GO:0032922--circadian regulation of gene expression
GO:0051591--response to cAMP
GO:0007623--circadian rhythm
GO:0019900--kinase binding
GO:0070932--histone H3 deacetylation
GO:0010608--posttranscriptional regulation of gene expression
GO:0043966--histone H3 acetylation
GO:0000989--transcription factor activity, transcription factor binding
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0045892--negative regulation of transcription, DNA-templated
GO:0008134--transcription factor binding
GO:0045944--positive regulation of transcription from RNA polymerase II promoter
GO:0005515--protein binding
GO:0005634--nucleus
GO:0070888--E-box binding
GO:0042634--regulation of hair cycle
GO:0043967--histone H4 acetylation
GO:0031625--ubiquitin protein ligase binding
GO:0000978--RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005737--cytoplasm