CGDB Gene Information

Tag Content
CGDB ID CGD-CaP-029122
Ensembl Accession ENSCPOP00000011999.2
Protein Name PER1
Ensembl Information ENSCPOG00000013328; ENSCPOT00000013458
Organism Cavia porcellus
NCBI Taxa ID 10141
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 19 ZT 7 LD 2 muscle Predicted from orthologs H8ZXB9
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845](View all)
Protein Sequence
(Fasta)		 SSETDPTYSL SQASRPLGAS AVASPPSLFC FPHGPDMSGP LEGADGGGDP GSGESFCPGE 60
VPSPGPPQHR PCPGPSLADD TDANSNGSSG NESNGHESRG ASQRSSHSSS SGNGKDSALL 120
ETTESSKSTN SQSPSPPSSS IAYSLLSASS EQDNPSTSGC SSEQSARART QKELMTALRE 180
LKLRLPPERR GKGRSGTLAT LQYALACVKQ VQANQDYYQQ WSLEEGEPCA MDMSTYTLEE 240
LEHITSEYTL RNQDTFSVAV SFLTGRIVYI SEQASVLLRC KRDVFRGARF SELLAPQDVG 300
VFYGSTAPSR LPTWGAGAST GSGLKDFTQE KSIFCRIRGG PDRDPGPRYQ PFRLTPYVTK 360
IRVSDGAPAQ PCCLLIAERI HSGYEAPRIP PDKRIFTTRH TPSCLFQDVD ERAAPLLGYL 420
PQDLLGAPVL LFLHPEDRPL MLAIHKKILQ LAGQPFDHSP IRFCARNGEY VTMDTSWAGF 480
VHPWSRKVAF VLGRHKVRTA PLNEDVFTPP GSSSALSLDS DIQELSEQIH RLLLQPVHSS 540
SPTGLCGVGP VASPGPLRSP GSSSDSNGGD AEGPGPPAPV TFQQICKDVH LVKHQGQQLF 600
IESRARPPPQ PRLPATGTFK AKALPLQPRD AEPEAVPAPS QAPLALAPEE AERKEASGCS 660
YQQINCLDSI LRYLESCNIP STTKRKCASS SSYTASSASD DDKQRTGPVP VGAKKDSPSA 720
VLAGEGAAPR KEPVVGGTLS PLALANKAES VASVTSQCSF SSTIVHVGDK KPPESDIIMM 780
EDLSGYAYRP VGLTKAVLSL HTQKEEQAFL SRFRDLGRLR GLDSSSTAPW APGCHHSPTP 840
PSRRHHCRSK AKRSRHHQTS RAEAPCYVSH ASSVPPSGPW PPPPADSTFP AVVQPYSLPV 900
FSPRGSPQPL PPAASSVPPA AFSAPLVTPV VALVLPNYLF PTPSSYPYGV HQAPAESPLT 960
PASHSPSPSL LPLPPSPPHR PDSPLFNSRC SSPLQLNLLQ LEEPSRTEAG AVAGGPGSSA 1020
GPPPPIEEAA EPETRLVEVT ESSNQDALSG SSDLLELLLQ EDSRSGTGSA ASGSPHEGGS 1080
TSASITRSSQ SSHTSKYFGS VDSSEAEAGA AQARAEPGDQ VIKYVLQDPI WLLMANADQH 1140
VMMTYQVPSR DMASVLKQDR ERLRAMQKQQ PRFSDDQRRE LGAVHSWVRK GQLPQALDVT 1200
ACVDCGSSTQ DPGHSDHPLF SDLDGLGLEP MGEEPRAQTG AKVSGSQDSA MEEEEQGGSS 1260
SSPALPAAEN GTS 1273
Nucleotide Sequence
(Fasta)		 TCCTCAGAGA CAGATCCTAC TTACTCCCTC AGCCAGGCCT CAAGGCCCCT TGGTGCATCT 60
GCGGTAGCAT CTCCACCTTC TCTGTTCTGT TTTCCACATG GCCCAGACAT GAGTGGCCCC 120
TTAGAAGGGG CTGATGGGGG AGGGGACCCC GGGTCAGGAG AATCCTTTTG TCCTGGAGAA 180
GTCCCGTCCC CTGGGCCCCC ACAACACCGG CCTTGCCCAG GCCCCAGCCT AGCTGATGAC 240
ACCGATGCCA ACAGCAATGG CTCAAGTGGC AATGAGTCCA ATGGGCATGA GTCCAGGGGT 300
GCATCTCAGC GGAGCTCACA TAGCTCCTCC TCTGGCAATG GGAAGGACTC TGCCCTGTTG 360
GAGACCACTG AGAGCAGCAA GAGCACAAAC TCCCAGAGCC CATCACCACC CAGCAGTTCC 420
ATTGCCTACA GCCTCCTGAG TGCCAGCTCA GAGCAGGACA ATCCATCTAC CAGTGGCTGC 480
AGCAGTGAAC AGTCAGCCCG GGCGCGGACC CAGAAGGAAC TCATGACAGC ACTTAGGGAG 540
CTCAAGCTTC GACTGCCACC AGAACGTCGG GGCAAGGGCC GCTCTGGTAC CCTCGCCACA 600
CTGCAGTATG CGCTGGCCTG TGTCAAGCAG GTGCAGGCCA ACCAGGATTA CTACCAGCAG 660
TGGAGCCTGG AAGAGGGTGA GCCTTGTGCC ATGGATATGT CCACGTACAC CCTGGAAGAG 720
CTGGAGCACA TCACATCTGA GTACACACTT CGCAACCAGG ATACTTTCTC CGTGGCTGTC 780
TCCTTCCTGA CAGGCCGAAT CGTCTACATT TCTGAGCAAG CAAGTGTCCT GCTACGGTGC 840
AAGCGGGATG TGTTCCGGGG TGCCCGCTTC TCAGAGCTCC TGGCTCCCCA GGATGTGGGT 900
GTTTTCTACG GTTCCACTGC CCCATCTCGT CTCCCCACCT GGGGCGCTGG GGCCTCTACA 960
GGTTCAGGCC TCAAGGACTT CACTCAGGAG AAGTCTATCT TCTGCCGGAT CAGAGGAGGT 1020
CCTGACCGGG ATCCAGGGCC TCGGTACCAG CCATTCCGCC TAACGCCGTA TGTGACCAAG 1080
ATCCGGGTCT CGGATGGGGC CCCTGCGCAG CCATGCTGCC TGCTCATTGC AGAGCGCATC 1140
CACTCGGGTT ATGAAGCTCC CCGGATCCCC CCTGACAAGA GGATCTTCAC CACACGGCAC 1200
ACACCCAGCT GCCTTTTCCA GGACGTGGAT GAAAGGGCTG CCCCGCTGCT GGGCTACCTG 1260
CCCCAGGACC TGCTGGGGGC CCCCGTGCTG CTCTTTCTGC ACCCCGAGGA CCGACCCCTG 1320
ATGCTGGCCA TCCACAAGAA GATCCTGCAG TTGGCGGGCC AGCCCTTTGA CCACTCTCCT 1380
ATCCGCTTCT GTGCCCGCAA CGGGGAATAT GTCACCATGG ACACCAGCTG GGCCGGCTTT 1440
GTACATCCCT GGAGCCGCAA GGTGGCCTTT GTATTGGGCC GCCACAAAGT ACGCACAGCA 1500
CCCCTGAATG AGGATGTGTT CACTCCCCCG GGCTCCAGCT CAGCTCTGTC CTTGGACTCT 1560
GATATCCAGG AGCTCTCGGA GCAGATCCAC CGGCTACTGT TGCAGCCTGT GCACAGCTCC 1620
AGCCCCACTG GGCTTTGTGG AGTCGGCCCT GTGGCATCCC CAGGTCCTCT TCGTAGCCCT 1680
GGCTCCTCCA GCGACAGCAA TGGTGGGGAC GCTGAGGGGC CTGGGCCTCC TGCTCCAGTG 1740
ACTTTCCAGC AGATCTGTAA GGATGTGCAT CTGGTGAAGC ACCAGGGCCA GCAGCTTTTC 1800
ATCGAGTCCC GGGCCCGGCC TCCTCCGCAA CCTCGCCTCC CAGCTACAGG AACATTCAAG 1860
GCCAAGGCCC TTCCCTTGCA GCCCCGAGAC GCAGAGCCAG AGGCTGTCCC TGCTCCCAGC 1920
CAAGCCCCAT TAGCCTTGGC CCCTGAGGAG GCTGAGAGGA AGGAAGCTTC CGGCTGTTCC 1980
TACCAGCAGA TCAACTGCCT GGACAGCATC CTCAGGTATC TGGAGAGCTG CAACATCCCC 2040
AGCACGACCA AGCGAAAGTG TGCCTCCTCG TCCTCCTATA CTGCCTCCTC AGCCTCTGAC 2100
GATGACAAGC AAAGGACAGG TCCAGTCCCC GTGGGGGCTA AGAAAGATTC ACCATCAGCA 2160
GTGCTGGCTG GGGAGGGGGC TGCTCCTCGG AAGGAACCGG TGGTGGGAGG CACCCTGAGC 2220
CCGCTCGCTC TGGCCAATAA GGCAGAGAGT GTGGCGTCTG TCACCAGTCA GTGTAGCTTC 2280
AGCTCGACCA TCGTCCATGT GGGAGACAAG AAGCCCCCGG AGTCGGACAT CATCATGATG 2340
GAGGACCTGT CTGGCTATGC CTACCGCCCA GTGGGTCTGA CCAAGGCCGT GCTGTCCCTG 2400
CATACACAGA AGGAAGAGCA AGCCTTCCTC AGCCGCTTCC GAGACCTTGG CAGGCTGCGT 2460
GGACTTGACA GCTCTTCCAC AGCCCCCTGG GCCCCTGGCT GCCATCACAG CCCCACGCCC 2520
CCCAGCCGCC GGCACCACTG CAGATCCAAA GCCAAGCGCT CACGCCACCA TCAGACCTCC 2580
AGGGCCGAAG CCCCCTGCTA TGTCTCCCAT GCCTCATCTG TGCCCCCCTC TGGTCCCTGG 2640
CCACCCCCAC CAGCTGATTC CACCTTCCCA GCAGTGGTCC AGCCCTACTC CCTCCCAGTG 2700
TTCTCCCCTA GAGGGAGCCC CCAGCCCCTT CCCCCTGCCG CCTCCTCTGT GCCCCCTGCT 2760
GCTTTCTCGG CCCCCCTGGT GACCCCAGTG GTGGCCTTGG TGCTCCCTAA CTATCTGTTT 2820
CCCACCCCAT CCAGCTACCC CTATGGGGTA CATCAGGCCC CTGCTGAGAG CCCTCTCACT 2880
CCTGCCTCCC ACTCACCCTC ACCCTCCCTG CTGCCGCTGC CCCCAAGCCC CCCACACCGC 2940
CCGGACTCCC CACTGTTCAA CTCAAGATGC AGCTCTCCAC TCCAGCTCAA TCTGCTGCAG 3000
TTAGAGGAGC CCTCCCGCAC TGAGGCGGGT GCTGTTGCAG GGGGGCCTGG GAGCAGTGCT 3060
GGGCCCCCAC CTCCTATTGA GGAGGCCGCA GAGCCGGAGA CCAGACTGGT GGAGGTAACC 3120
GAGTCCTCTA ACCAGGATGC GCTCTCTGGC TCCAGTGACC TGCTGGAGCT GCTGCTTCAA 3180
GAGGACTCTC GCTCTGGCAC AGGCTCAGCA GCTTCGGGCT CCCCCCACGA AGGTGGCAGC 3240
ACCTCAGCCA GCATTACTCG AAGCAGTCAG AGCAGCCACA CAAGCAAGTA CTTTGGCAGC 3300
GTTGATTCTT CAGAGGCTGA GGCTGGGGCT GCTCAGGCCA GGGCTGAGCC TGGGGACCAG 3360
GTCATTAAGT ATGTGCTCCA GGATCCCATC TGGCTGCTCA TGGCCAATGC TGACCAGCAC 3420
GTTATGATGA CTTACCAGGT GCCCTCCAGG GACATGGCCT CTGTGCTGAA GCAGGATCGG 3480
GAGCGGCTCC GGGCAATGCA GAAGCAGCAG CCTCGGTTCT CAGACGACCA GCGGCGGGAA 3540
CTGGGTGCTG TGCACTCCTG GGTTCGGAAG GGCCAGCTGC CTCAGGCCCT TGATGTGACG 3600
GCCTGTGTGG ACTGTGGTAG CAGCACCCAA GACCCTGGCC ACTCTGATCA CCCACTGTTC 3660
TCAGACCTGG ATGGACTGGG GCTGGAGCCT ATGGGCGAGG AGCCCAGGGC CCAAACGGGG 3720
GCCAAGGTCT CCGGCTCTCA GGACTCAGCC ATGGAGGAGG AGGAACAAGG TGGCAGCTCA 3780
TCCAGTCCAG CCTTACCTGC TGCAGAAAAT GGCACCAGCT AG 3822
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus59.45 0.00e+00 1390.6
CGD-GaM-021007Gadus morhua53.85 6.00e-176 615.1
CGD-HoS-021038Homo sapiens (Human)59.98 0.00e+00 1386.7
CGD-OvA-022197Ovis aries62.6 0.00e+00 1337
CGD-RaN-021793Rattus norvegicus61.85 0.00e+00 1379
Gene Ontology

GO:0005515--protein binding
GO:0043966--histone H3 acetylation
GO:0019900--kinase binding
GO:0070888--E-box binding
GO:0042634--regulation of hair cycle
GO:0032922--circadian regulation of gene expression
GO:0043967--histone H4 acetylation
GO:0007623--circadian rhythm
GO:0031625--ubiquitin protein ligase binding
GO:0000978--RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005737--cytoplasm
GO:0005634--nucleus
GO:0045944--positive regulation of transcription from RNA polymerase II promoter
GO:0008134--transcription factor binding
GO:0045892--negative regulation of transcription, DNA-templated
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0000989--transcription factor activity, transcription factor binding
GO:0010608--posttranscriptional regulation of gene expression
GO:0070932--histone H3 deacetylation
GO:0051591--response to cAMP
GO:0000976--transcription regulatory region sequence-specific DNA binding
GO:0031490--chromatin DNA binding
GO:0002028--regulation of sodium ion transport
GO:0042752--regulation of circadian rhythm
GO:2000323--negative regulation of glucocorticoid receptor signaling pathway
GO:0009416--response to light stimulus
GO:0043153--entrainment of circadian clock by photoperiod
GO:0097167--circadian regulation of translation