CGDB Gene Information

Tag Content
CGDB ID CGD-DiO-053613
Ensembl Accession ENSDORP00000003614.1
Protein Name Per1
Ensembl Information ENSDORG00000003870; ENSDORT00000003869
Organism Dipodomys ordii
NCBI Taxa ID 10020
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:MGI Symbol;Acc:MGI:1098283](View all)
Protein Sequence
(Fasta)		 MSGPLEGADG GGNPRPEESF CSGGVPSPGP PQHRPCPGPS LADDTDANSN GSSGNESNGH 60
ESRGASQRSS HSSSSGNGKD SALLETTESS KSTNSQSPSP PSSSIAYSLL SASSEQDNPS 120
TSGCSSEQSA RARTQKELMT ALRELKLRLP PERRGKGRSG TLATLQYALA CVKQVQANQE 180
YYQQWSLEES EPCAMDMSTY TLEELEHITS EYTLRNQDTF SVAVSFLTGR IVYISEQAGV 240
LLRCKRDVFR GARFSELLAP QDVGVFYGST SPSRLPTWGA GASAGSGLKD FTQEKSVFCR 300
IRGGPDRDPG PRYQPFRLTP YVTKIRVSDG APAQPCCLLI AERIHSGYEA PRIPPDKRIF 360
TTRHTPSCLF QDVDERAAPL LGYLPQDLLG APVLLFLHPE DRPLMLAIHK KILQLAGQPF 420
DHSPIRFCAR NGEYVTMDTS WAGFVHPWSR KVAFVLGRHK VRTAPLNEDV FTPPAPNPAL 480
SLDSDIQELS EQIHRLLLQP VHSSSPTGLC GVGPMTSPGP LHSPGSSSDS NGGDAEGPGP 540
PAPVTFQQIC KDVHLVKHQG QQLFIESRAR PPPRPRLPAP NIFKAKALPC QSPDPELEAA 600
PAPIQASLAL APEEAERKEA SSCSYQQINC LDSILRYLES CNIPSTTKRK CASSSSYTAS 660
SASDDDKQRT GPVPVGAKKD PSSAVLSGEG ATPRKEPVVG GTLSPLTLAN KAESVVSVTS 720
QCSFSSTIVH VGDKKPPESD IVMMEDLPSL ATGPAPSPAP SPTVAPDPAP DAYRPVGLTK 780
AVLSLHTQKE EQAFLSRFRD LGRLRGLDSS SVAPSAPGER GCHHGPAPPG RRHHCRSKAK 840
RSRHHQIPRA EAPCCVSHPS SVPPSGSWPP PPASTPFPAV VQPYPLPVFS PRGGSQPLSV 900
PNSVSPTAFP SPLVTPVVAL VLPNYLFPTP PSYPYGVPQV PAEGPPTPAS HSPSPSLPPL 960
PPSPVHRPDS PLFNSRCSSP LQLNLLQLEE PPRMEGAAAA AGPGNSAGPP PPSEEAAEPE 1020
ARLVEATEFS NQDALSGSSD LLELLLQEDS RSGTGSAASG SLGSGLGSGS GSGSQEGGST 1080
SASLTRSSQS SHTSKYFGSI DSSEAEAGAA QARAEPGDQV IKYVLQDPIW LLMANADQRV 1140
MMTYQVPSRD VASVLKQDRE RLRAMQKQQP RFSEDQRREL GAVHSWVRKG QLPRALDVMA 1200
CVDCGSSTQD PGHSDEPLFS ELDGLGLEPM EEGGGEGGGG GSGGGEGEVS EETQAHVEAK 1260
VSSSQDSAME EEEQGGSSPS PALPAENGTS
Nucleotide Sequence
(Fasta)		 ATGAGTGGCC CCCTGGAAGG GGCTGATGGG GGAGGAAACC CTAGGCCCGA AGAATCTTTT 60
TGTTCTGGAG GAGTCCCGTC CCCTGGACCC CCACAGCATC GGCCCTGCCC AGGCCCCAGC 120
CTGGCTGACG ATACCGATGC TAACAGCAAT GGCTCAAGTG GCAATGAGTC CAATGGGCAC 180
GAGTCCAGAG GTGCATCTCA ACGGAGCTCA CATAGCTCCT CCTCTGGAAA TGGCAAGGAT 240
TCGGCCCTGC TGGAGACCAC TGAGAGCAGC AAGAGCACAA ACTCTCAGAG CCCATCCCCA 300
CCTAGTAGTT CCATTGCCTA TAGCCTCCTG AGTGCCAGCT CTGAGCAGGA CAACCCATCT 360
ACCAGTGGCT GCAGCAGTGA ACAGTCAGCC AGAGCAAGAA CCCAGAAGGA ACTCATGACT 420
GCACTTCGGG AGCTCAAGCT TAGGCTGCCA CCTGAGCGTC GGGGCAAGGG CCGCTCTGGG 480
ACCCTGGCCA CTCTACAGTA TGCACTAGCC TGTGTCAAGC AGGTGCAGGC TAACCAGGAG 540
TACTACCAGC AGTGGAGCCT GGAAGAAAGT GAGCCTTGTG CCATGGACAT GTCCACCTAC 600
ACGTTGGAGG AGCTGGAACA CATCACATCT GAATACACAC TTCGCAACCA GGATACCTTC 660
TCTGTGGCTG TCTCCTTCCT GACTGGCCGA ATCGTCTACA TTTCAGAGCA GGCAGGTGTC 720
CTGCTGCGTT GCAAGCGGGA CGTGTTCCGA GGTGCCCGCT TCTCGGAGCT CCTGGCTCCC 780
CAGGATGTGG GTGTCTTCTA TGGCTCCACT TCCCCATCTC GTCTGCCCAC CTGGGGTGCT 840
GGGGCCTCTG CAGGTTCGGG CCTCAAGGAC TTTACCCAGG AGAAGTCTGT CTTTTGCCGT 900
ATCAGAGGTG GTCCTGATCG GGATCCAGGG CCTCGGTATC AGCCATTCCG CCTAACTCCA 960
TACGTGACCA AGATTCGGGT CTCAGACGGG GCCCCTGCGC AGCCATGCTG CCTGCTTATT 1020
GCAGAGCGCA TCCACTCGGG TTATGAAGCT CCCCGGATCC CACCTGATAA GAGGATCTTC 1080
ACCACAAGGC ACACACCCAG CTGCCTCTTC CAGGATGTGG ATGAAAGGGC TGCCCCACTG 1140
CTGGGCTACC TGCCCCAGGA CCTCCTGGGG GCCCCAGTGC TCCTGTTCCT CCATCCTGAG 1200
GACCGACCCC TCATGCTGGC CATCCACAAG AAGATTCTGC AGCTGGCTGG GCAGCCCTTT 1260
GACCACTCCC CTATTCGCTT CTGTGCCCGT AATGGAGAAT ATGTCACCAT GGACACCAGT 1320
TGGGCTGGCT TTGTGCATCC TTGGAGCCGT AAGGTGGCTT TTGTATTGGG CCGCCACAAA 1380
GTTCGCACTG CACCCCTGAA TGAGGATGTA TTCACTCCCC CGGCCCCCAA CCCAGCTCTG 1440
TCCCTGGACT CTGATATCCA GGAGCTCTCA GAGCAGATCC ATCGTCTGCT ATTGCAGCCT 1500
GTTCACAGCT CCAGCCCCAC CGGGCTCTGT GGTGTTGGCC CTATGACATC CCCAGGCCCT 1560
CTCCACAGCC CTGGCTCCTC CAGTGATAGC AATGGGGGTG ATGCCGAGGG GCCTGGGCCT 1620
CCTGCTCCAG TAACTTTCCA GCAGATCTGT AAGGATGTCC ATCTGGTGAA ACACCAGGGA 1680
CAGCAGCTCT TCATTGAGTC CCGGGCCCGG CCTCCACCCC GGCCTCGCCT CCCTGCTCCA 1740
AACATATTCA AGGCCAAGGC CCTTCCATGC CAGTCTCCTG ACCCAGAGCT GGAAGCAGCG 1800
CCTGCTCCCA TCCAGGCCTC GCTTGCCTTA GCCCCTGAGG AGGCCGAGAG GAAAGAAGCC 1860
TCCAGCTGTT CCTACCAGCA GATCAACTGC CTGGACAGCA TCCTCAGGTA CCTGGAAAGC 1920
TGCAACATCC CCAGCACGAC CAAGCGTAAA TGTGCCTCCT CTTCCTCCTA CACTGCCTCC 1980
TCTGCATCTG ATGATGACAA GCAGAGGACA GGTCCAGTCC CTGTGGGGGC CAAGAAAGAT 2040
CCTTCGTCGG CAGTGCTGTC TGGGGAGGGG GCCACTCCTC GGAAGGAGCC AGTGGTGGGA 2100
GGCACCCTGA GTCCGCTCAC TCTGGCCAAT AAGGCGGAGA GTGTGGTGTC CGTCACCAGT 2160
CAGTGTAGCT TCAGCTCCAC CATCGTGCAT GTAGGAGACA AGAAGCCCCC GGAGTCGGAC 2220
ATTGTCATGA TGGAAGACTT GCCTAGCCTA GCCACAGGAC CAGCCCCCAG CCCGGCCCCC 2280
AGCCCCACTG TAGCCCCTGA CCCAGCCCCG GATGCCTACC GCCCAGTGGG CCTGACGAAG 2340
GCTGTGCTGT CCCTGCACAC ACAGAAGGAG GAACAAGCCT TTCTCAGCCG ATTCCGAGAC 2400
CTCGGCAGGC TTCGTGGGCT TGACAGCTCT TCTGTAGCCC CCTCAGCCCC TGGGGAACGA 2460
GGCTGCCACC ATGGCCCCGC GCCCCCTGGC CGCCGACACC ACTGCCGATC CAAAGCCAAG 2520
CGCTCACGCC ACCACCAGAT TCCCCGGGCC GAAGCCCCCT GCTGTGTCTC CCACCCCTCA 2580
TCTGTGCCCC CTTCTGGCTC CTGGCCCCCT CCACCAGCCT CTACTCCCTT CCCAGCGGTG 2640
GTCCAGCCCT ACCCTCTCCC AGTGTTCTCT CCTCGAGGAG GCTCTCAACC TCTTTCTGTC 2700
CCCAACTCTG TGTCCCCGAC TGCTTTCCCT TCCCCACTTG TGACCCCCGT GGTAGCCTTG 2760
GTACTCCCTA ACTACCTATT TCCCACCCCA CCTAGCTATC CCTATGGGGT GCCCCAGGTC 2820
CCTGCTGAGG GGCCTCCTAC TCCCGCTTCC CACTCGCCTT CCCCATCTCT GCCTCCACTC 2880
CCCCCCAGTC CCGTGCACCG CCCAGACTCC CCACTGTTCA ACTCAAGATG CAGCTCCCCA 2940
CTCCAGCTCA ACCTGCTGCA GCTTGAGGAG CCTCCACGCA TGGAGGGGGC TGCTGCTGCA 3000
GCGGGCCCTG GGAACAGTGC TGGGCCCCCC CCTCCCAGTG AGGAGGCCGC TGAGCCAGAG 3060
GCCAGACTGG TGGAGGCAAC TGAGTTCTCC AATCAGGATG CGCTGTCTGG CTCTAGTGAC 3120
CTGCTAGAGC TGCTGCTGCA AGAGGACTCC CGATCTGGCA CAGGATCTGC AGCCTCAGGC 3180
TCCCTGGGCT CTGGCTTGGG CTCTGGGTCT GGTTCTGGCT CCCAGGAAGG GGGTAGCACC 3240
TCCGCCAGCC TCACGCGCAG CAGTCAGAGC AGCCATACAA GCAAGTACTT CGGCAGCATT 3300
GACTCTTCAG AGGCTGAGGC TGGGGCTGCT CAGGCCAGGG CTGAGCCTGG AGACCAGGTC 3360
ATTAAGTATG TGCTCCAGGA TCCCATCTGG CTGCTCATGG CCAATGCTGA CCAGCGTGTC 3420
ATGATGACCT ACCAGGTACC CTCCAGGGAC GTGGCCTCTG TGCTGAAGCA GGATCGGGAG 3480
CGACTTCGGG CTATGCAGAA GCAGCAGCCT CGGTTCTCAG AGGACCAGCG GCGGGAGCTG 3540
GGTGCTGTGC ATTCCTGGGT TCGGAAAGGC CAGCTGCCTC GAGCTCTTGA TGTGATGGCC 3600
TGTGTGGACT GTGGTAGCAG CACCCAAGAC CCTGGCCACT CTGATGAACC ACTCTTCTCT 3660
GAGCTGGATG GACTGGGGCT GGAGCCTATG GAGGAGGGCG GAGGCGAGGG TGGTGGTGGT 3720
GGTAGTGGTG GTGGTGAGGG TGAGGTCAGT GAGGAGACTC AGGCCCACGT TGAGGCCAAG 3780
GTCTCAAGTT CTCAGGACTC TGCCATGGAG GAGGAAGAGC AAGGTGGGAG CTCACCCAGT 3840
CCAGCCTTAC CTGCGGAAAA TGGCACTAGC TAG 3873
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus61.28 0.00e+00 1431.8
CGD-HoS-021038Homo sapiens (Human)61.84 0.00e+00 1468
CGD-OvA-022197Ovis aries60.2 0.00e+00 1407.1
CGD-RaN-021793Rattus norvegicus63.72 0.00e+00 1443.7
Gene Ontology

GO:0005515--protein binding
GO:0043966--histone H3 acetylation
GO:0019900--kinase binding
GO:0070888--E-box binding
GO:0042634--regulation of hair cycle
GO:0032922--circadian regulation of gene expression
GO:0043967--histone H4 acetylation
GO:0007623--circadian rhythm
GO:0031625--ubiquitin protein ligase binding
GO:0000978--RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005737--cytoplasm
GO:0005634--nucleus
GO:0045944--positive regulation of transcription from RNA polymerase II promoter
GO:0008134--transcription factor binding
GO:0045892--negative regulation of transcription, DNA-templated
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0000989--transcription factor activity, transcription factor binding
GO:0010608--posttranscriptional regulation of gene expression
GO:0070932--histone H3 deacetylation
GO:0051591--response to cAMP
GO:0000976--transcription regulatory region sequence-specific DNA binding
GO:0031490--chromatin DNA binding
GO:0002028--regulation of sodium ion transport
GO:0042752--regulation of circadian rhythm
GO:2000323--negative regulation of glucocorticoid receptor signaling pathway
GO:0009416--response to light stimulus
GO:0043153--entrainment of circadian clock by photoperiod
GO:0097167--circadian regulation of translation