CGDB Gene Information

Tag Content
CGDB ID CGD-PtV-028552
Ensembl Accession ENSPVAP00000015450.1
Protein Name PER1
Ensembl Information ENSPVAG00000016372; ENSPVAT00000016372
Organism Pteropus vampyrus
NCBI Taxa ID 132908
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 19 ZT 7 LD 2 muscle Predicted from orthologs H8ZXB9
ZT 21 ZT 9 LD 6 duodenum Predicted from orthologs Q8QGQ8
ZT 2 ZT 18 LD 3.17 embryos Predicted from orthologs Q8QGQ8
ZT 6 ZT 18 LD 8 embryos Predicted from orthologs Q8QGQ8
CT 12 CT 0 DD1 3 granulosa cells Predicted from orthologs Q8QGQ8
ZT 3 ZT 18 LD 84.29 pineal glands Predicted from orthologs Q8QGQ8
ZT 23 ZT 11 LD 2.25 spleen Predicted from orthologs Q8QGQ8
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845](View all)
Protein Sequence
(Fasta)		 MSDPLEGVDG GGDPRPGESF CSGGAPSPGP PQHRPCPGPS LTDDTDANSN GSSGNESNGP 60
ESRGASQRSS HSSSSGNGKD SALLETTESS KSTNSQSPSP PSSSIAYSLL SASSEQDNPS 120
TSGCSSEQSA RARTQKELMT ALRELKLRLP PEHRGKGRSG TLATLQYALA CVKQVQANQE 180
YYQQWSLEEG EPCAMDMSTY TLEELEHITS EYTLRNQDTF SVAVSFLTGR IVYISEQAGI 240
LLHCKRDVFR GARFSELLAP QDVGVFYGST APSRLPTWGT GASAGSGFKD FTQEKSVFCR 300
IGPDRDLGPR YQPFRLTPYL TKIRVSDGAP TQPCCLLIAE RVHSGYEAPR IPPDKRIFTT 360
RHTPSCLFQD VDERAAPLLG YLPQDLLGAP VLLFLHPEDR PLMLAIHKKI LQLAGQPFDH 420
SPIRFCARNG EYVTMDTSWA GFVHPWSRKV AFVLGRHKVR TAPLNEDVFT PPAPSPALSP 480
DPDIQELSEQ IHRLLLQPVH SPSPTGLCGV GPVTSPGPLL SPGSSSDSNG GDAEGPGPPA 540
PVTFQQICKD VHLVKHQGQQ LFIESRARPL PRPHLPATDT FRAKILPRHS PDPELEAAPP 600
PVQAPLVLAT EEAERKETSS CSYQQINCLD SILRYLESCN IPGTTKRKCA SSSSCTTSSA 660
SDDDKQRTGP VSVGTKKDPS AVLSGEGATP RKEPVVGGTL SPLTLANKAE SVVSVTSQCS 720
FSSTIVHVGD KKPPESDIIM LEDLPSLAPG PAPSPAPSPT VAPDPAPDAY RPVGLTKAVL 780
SLHTQKEEQA FLSRFRDLSR LRGLDGSSVA PLAPGERGCH HGPVPPSRRH HCRSKAKRSR 840
HHQTPRVEAP CYISHPSPVP PSAPWPPPSA TTPFPSVVQP YPLPVFSPRG NPQPLPPAPT 900
SVPPAAFPAP LVTPMVALVL PNYLFPTPSS YPYGVLQTST EGPPTPASHS PSPSLPPLLP 960
SPLHRPDSPL FNSRCSSPLQ LNLLQLEEPP RVDGGAVAGG PGSSSGPLPP SEEAAEPEAR 1020
LMKEIDSSFT DALCISLDAL HLVYVYESHS GTRTVVTDSL CVVLFSGYGS SSNDRXXXXX 1080
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1140
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRALDVMAC VDCGSNTQDP 1200
GHPDDPLFSE LDGLGLEPME EGESSGGGGE VEGGDEAQAQ FGTRVSTSQD LAMEEEEQGG 1260
SSCSPAIPAT HNGTS 1275
Nucleotide Sequence
(Fasta)		 ATGAGTGACC CCCTAGAAGG GGTTGATGGG GGAGGGGATC CCAGGCCAGG GGAATCCTTT 60
TGTTCTGGAG GGGCCCCATC TCCTGGGCCT CCACAGCACC GGCCTTGCCC TGGCCCCAGC 120
TTGACTGATG ACACGGATGC CAACAGCAAT GGCTCAAGTG GCAATGAGTC CAATGGGCCC 180
GAGTCCAGGG GTGCATCTCA GCGGAGCTCA CATAGCTCTT CCTCTGGCAA TGGCAAGGAC 240
TCAGCCCTGT TGGAGACTAC TGAAAGCAGC AAGAGCACAA ACTCTCAGAG TCCGTCCCCA 300
CCCAGCAGTT CCATTGCCTA CAGCCTCCTG AGTGCCAGCT CAGAACAGGA CAACCCGTCT 360
ACCAGTGGCT GCAGCAGTGA ACAGTCAGCC CGGGCAAGAA CCCAGAAGGA ACTCATGACG 420
GCACTTCGGG AGCTCAAGCT TCGGCTGCCG CCAGAGCATC GGGGCAAGGG CCGCTCTGGG 480
ACCCTGGCCA CACTACAGTA TGCTCTGGCC TGTGTCAAGC AGGTGCAGGC CAACCAGGAA 540
TACTACCAGC AGTGGAGCTT GGAGGAGGGT GAACCTTGTG CCATGGACAT GTCTACCTAC 600
ACTTTGGAGG AGCTGGAGCA CATCACGTCT GAGTACACAC TTCGAAACCA GGATACCTTC 660
TCCGTGGCTG TCTCCTTCCT GACAGGCCGA ATCGTCTATA TTTCGGAGCA GGCAGGTATC 720
CTGCTGCACT GCAAGCGGGA TGTGTTCCGG GGTGCTCGCT TCTCAGAGCT CCTGGCTCCC 780
CAGGATGTGG GCGTCTTCTA TGGTTCCACT GCCCCATCTC GCCTGCCCAC CTGGGGCACT 840
GGGGCCTCAG CAGGTTCAGG CTTTAAGGAC TTCACCCAGG AGAAGTCTGT CTTCTGCCGT 900
ATCGGTCCTG ACCGGGATCT GGGGCCTCGT TACCAGCCAT TCCGCCTAAC CCCGTATTTG 960
ACCAAGATCA GGGTCTCAGA TGGGGCCCCC ACGCAGCCAT GCTGCCTGCT CATCGCAGAA 1020
CGTGTCCACT CGGGTTACGA AGCTCCTCGG ATCCCTCCCG ACAAGAGAAT CTTCACCACA 1080
CGACACACGC CTAGCTGCCT CTTCCAGGAT GTGGACGAAA GGGCTGCCCC GCTGCTCGGC 1140
TACCTCCCCC AGGACCTCCT GGGGGCCCCA GTGCTCTTGT TCCTGCATCC CGAGGACCGA 1200
CCCTTGATGC TGGCTATCCA CAAGAAGATC CTGCAGCTGG CTGGCCAGCC CTTTGATCAC 1260
TCCCCTATCC GTTTCTGTGC CCGTAATGGA GAGTATGTCA CCATGGACAC CAGCTGGGCT 1320
GGTTTCGTGC ACCCCTGGAG CCGCAAGGTA GCCTTTGTGT TGGGCCGCCA CAAAGTACGC 1380
ACGGCACCCC TGAATGAGGA TGTGTTCACT CCACCAGCCC CCAGCCCAGC TCTGTCCCCG 1440
GACCCTGATA TCCAGGAGCT ATCTGAGCAG ATCCACCGGC TGCTGTTGCA GCCAGTGCAC 1500
AGCCCCAGCC CAACGGGGCT ATGTGGAGTC GGCCCTGTGA CTTCCCCAGG TCCTCTCCTC 1560
AGCCCTGGCT CCTCCAGTGA TAGCAATGGG GGTGATGCTG AGGGGCCTGG GCCTCCTGCC 1620
CCAGTGACCT TCCAGCAGAT CTGTAAGGAT GTACATCTGG TGAAGCACCA GGGGCAGCAG 1680
CTTTTTATTG AGTCCCGGGC TCGGCCTCTG CCCCGGCCCC ACCTCCCTGC TACAGACACA 1740
TTCAGGGCCA AGATCCTTCC TCGCCATTCT CCAGACCCAG AGCTGGAGGC AGCCCCTCCT 1800
CCAGTCCAGG CCCCACTGGT TTTGGCTACT GAAGAGGCTG AGAGAAAAGA AACCTCCAGT 1860
TGCTCCTACC AACAGATCAA CTGCCTGGAC AGCATCCTCA GGTACCTGGA GAGCTGCAAC 1920
ATCCCTGGCA CGACCAAGCG TAAATGTGCC TCCTCTTCCT CCTGCACCAC CTCCTCAGCC 1980
TCTGATGATG ATAAGCAGAG GACAGGTCCA GTCTCTGTGG GGACCAAGAA AGATCCGTCG 2040
GCAGTGCTGT CTGGGGAGGG GGCCACCCCT CGGAAGGAGC CGGTGGTGGG AGGCACCCTG 2100
AGCCCGCTCA CTCTGGCCAA TAAGGCGGAG AGCGTGGTGT CCGTCACCAG TCAGTGTAGC 2160
TTCAGCTCTA CCATCGTCCA TGTAGGAGAC AAGAAGCCCC CGGAGTCGGA CATCATCATG 2220
TTGGAAGACC TGCCTAGCCT GGCTCCAGGC CCAGCCCCCA GCCCAGCCCC CAGCCCCACA 2280
GTAGCCCCTG ACCCAGCCCC AGATGCTTAC CGCCCCGTGG GCCTGACCAA GGCTGTGCTG 2340
TCCCTGCACA CACAGAAGGA GGAGCAGGCC TTCCTCAGCC GCTTCCGTGA CCTCAGCAGG 2400
CTGCGTGGAC TTGATGGCTC CTCTGTGGCC CCCTTGGCCC CTGGTGAGCG AGGCTGCCAC 2460
CATGGTCCTG TACCCCCCAG CCGCCGCCAT CACTGCCGAT CCAAAGCCAA GCGCTCACGT 2520
CACCACCAGA CCCCACGGGT CGAAGCGCCC TGCTATATCT CCCATCCCTC ACCTGTGCCA 2580
CCTTCTGCCC CCTGGCCCCC ACCATCAGCT ACTACTCCCT TCCCATCTGT GGTCCAGCCC 2640
TACCCCCTTC CAGTGTTCTC ACCCCGAGGC AACCCCCAGC CTCTTCCCCC TGCCCCTACA 2700
TCTGTGCCCC CTGCAGCTTT CCCAGCCCCC CTGGTGACCC CAATGGTGGC CTTAGTGCTC 2760
CCTAACTATC TGTTCCCTAC CCCATCCAGC TATCCCTATG GGGTACTCCA GACCTCCACC 2820
GAGGGGCCTC CTACCCCTGC CTCCCATTCC CCTTCTCCAT CCCTGCCCCC ACTGCTCCCC 2880
AGCCCTCTCC ACCGCCCGGA CTCTCCGCTA TTCAACTCGA GATGCAGCTC CCCGCTCCAG 2940
CTAAATCTAC TGCAGCTTGA GGAGCCCCCC CGTGTTGATG GGGGTGCTGT TGCAGGGGGC 3000
CCTGGGAGCA GTTCTGGGCC CCTGCCTCCC AGTGAGGAGG CTGCTGAGCC AGAGGCCAGA 3060
CTGATGAAGG AAATTGATTC ATCATTTACT GATGCCCTAT GCATCTCATT AGATGCCTTG 3120
CATCTGGTGT ATGTATATGA ATCTCACTCT GGCACAAGGA CTGTGGTCAC AGATTCATTG 3180
TGTGTCGTTC TGTTTTCAGG ATATGGATCC AGCTCAAATG ACAGGNNNNN NNNNNNNNNN 3240
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 3300
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 3360
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 3420
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 3480
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 3540
NNNNNTCGGG CTCTTGATGT AATGGCCTGT GTGGACTGCG GTAGTAACAC CCAGGACCCT 3600
GGCCACCCTG ATGACCCACT CTTCTCGGAA CTGGATGGAT TAGGGCTGGA GCCCATGGAG 3660
GAGGGCGAAA GCAGTGGTGG TGGTGGTGAG GTTGAGGGTG GAGATGAGGC CCAGGCCCAA 3720
TTTGGGACCA GGGTCTCAAC CTCTCAGGAC CTAGCCATGG AGGAAGAGGA ACAAGGTGGG 3780
AGCTCATGCA GTCCAGCCAT ACCTGCCACA CATAATGGCA CCAGCTAG 3828
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus62.8 0.00e+00 1249.6
CGD-GaM-021007Gadus morhua54.41 0.00e+00 632.5
CGD-GaG-021834Gallus gallus42.76 5.00e-178 622.1
CGD-HoS-021038Homo sapiens (Human)63.05 0.00e+00 1265.8
CGD-OvA-022197Ovis aries61.85 0.00e+00 1223.4
CGD-RaN-021793Rattus norvegicus62.02 0.00e+00 1231.5
Gene Ontology

GO:0005515--protein binding
GO:0097167--circadian regulation of translation
GO:0043153--entrainment of circadian clock by photoperiod
GO:0009416--response to light stimulus
GO:2000323--negative regulation of glucocorticoid receptor signaling pathway
GO:0042752--regulation of circadian rhythm
GO:0002028--regulation of sodium ion transport
GO:0031490--chromatin DNA binding
GO:0000976--transcription regulatory region sequence-specific DNA binding
GO:0032922--circadian regulation of gene expression
GO:0051591--response to cAMP
GO:0007623--circadian rhythm
GO:0019900--kinase binding
GO:0070932--histone H3 deacetylation
GO:0010608--posttranscriptional regulation of gene expression
GO:0043966--histone H3 acetylation
GO:0000989--transcription factor activity, transcription factor binding
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0045892--negative regulation of transcription, DNA-templated
GO:0008134--transcription factor binding
GO:0045944--positive regulation of transcription from RNA polymerase II promoter
GO:0005634--nucleus
GO:0070888--E-box binding
GO:0042634--regulation of hair cycle
GO:0043967--histone H4 acetylation
GO:0031625--ubiquitin protein ligase binding
GO:0000978--RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005737--cytoplasm