CGDB Gene Information

Tag Content
CGDB ID CGD-LaC-070172
Ensembl Accession ENSLACP00000005084.1
Protein Name PER1
Ensembl Information ENSLACG00000004523; ENSLACT00000005130
Organism Latimeria chalumnae
NCBI Taxa ID 7897
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845](View all)
Protein Sequence
(Fasta)		 MSLHSDLGRS HAEGAGHSDG SEGHGAGAEW HDCAQQEVEQ QGQSADDMEV KSNGNYSSGN 60
YSSGNESNGH VSHENNSQGR QSVHSSRSSS SGNGKDSALL LETTESNKSS NSQSPSPPSS 120
SIAYSFLSAS SEQDHPSTSG CSSEQSARVK TQKELMKALK HLKIRLPSEK RSKGKSNTLA 180
TLQYALSCVK QVQANQEYYQ QWTIEEDQPC CLDLSTYTIA ELERITSEYT LKNSDTFSVA 240
VSFITGKILY ISDQAAFILR CKRDVFKGAK FVEFLAPQDV SVFYSSTAPY RLPSWSVCSG 300
AVAAPMDYTQ EKSVFCRISG ARGREHKLRY HPFRLTPYMM KVCDSENMEG QPCCLLLAEK 360
IHSGYEASTA PRIPADKRIF TTRHTPSCLF QEVDERAVPL LGYLPQDLIG TPVLFYLHPE 420
DRPLMLTIHK KILQYAGQPF EHSPIRFCAR NGEYVTMDTS WSSFVNPWNR KVSFIMGRHK 480
VRTAPLNEDV FMPPKPADLK LMGSDIQELT EQIHRLLLQH PVHSNGSMGY CSIGSSTSHE 540
QFLSIASSSD GNGIHTEEVQ LNKPMTFQQI CKDVHKVKNQ GQQVFIESRS KLQPKKQPTT 600
VSEKPKEAIT QLKDSPKEPA ASTPGKLSIS KPPTQKDQSL YSYQQINCLD SIIRYLENYN 660
IPNAVKRKCA SSCYTTSSSS DSDNQKASED APAGAGSRKD TAEGLLPAAG RESEIKAAAG 720
GPSAVVGAVL APLALASQAD SVVSATSQCS FNSTIVHVGD KKPPDTGRYQ EGRLGQEETS 780
KKKKPKQVVI RYLGMCSCKK VRGFSLLIRD AAELSRCKSS GLEGLYTLSL LFTPFHCSVI 840
FCFCFWNFLH RISCKTPESG VWSTVIWERP PPPKKRCDSV CLKQACKNGC PLVIIFLHCS 900
CKTHGWEAFG QEVAAAILKL DGLETESPPE EPQIFPWETI DVPKNHALCM TLEIMLCIDS 960
EGTIRVIQLP LIFAFGLLTG SSQSSNTSKY FGSIDSSEND HNAKKLAKME NNEQFIKYVL 1020
QDPIWLLMAN TDDKVMMTYQ MPVRDMATVL REDKEKLKLM QKHQPKFTES QKMELSTVHP 1080
WMKKGLLPKA IDVTACAGCG GNGAISAATP YDVQVHDLEF CTMLEPMEEG G 1131
Nucleotide Sequence
(Fasta)		 TGTTTCTTCC TTTTTTCGGT TTAAACTTTT ACTTTATTTA TTTTTAACTT TTTTTCTATT 60
CTGTTGTTCC AGGTCTGTCT TGCTTTGCAT TGTGGGAAAA TTTATCTGCC AGTTACAAAG 120
AACATTTTTT TCAAACCTTC AAGAGGGGGG AAAAAGAAAC TCAAACTGTT TAAAGGGTTT 180
GGGGGAAACG TCCCAAAGGA GAATCGGCAA GGGTCTCTGC GATCCTTACC CACCGTTTTC 240
ATTTCGAACC CGCTTTCCTT TCAAGATGCA CCAGCACTGT TGCGCCACTT AAGAAGCCAT 300
GAGTCTCCAT TCGGATTTGG GGCGGAGCCA TGCCGAGGGG GCGGGGCACT CTGACGGGAG 360
CGAGGGGCAC GGCGCGGGCG CCGAGTGGCA CGACTGCGCC CAGCAGGAGG TGGAGCAGCA 420
GGGCCAGTCG GCCGACGACA TGGAGGTGAA GAGCAACGGC AACTACTCCA GCGGCAACTA 480
CTCCAGCGGC AACGAGTCCA ACGGGCACGT GTCCCACGAG AACAACTCGC AGGGGCGGCA 540
GTCCGTGCAC AGCTCACGCA GCAGCTCCAG CGGCAACGGG AAAGACTCCG CCCTCTTGTT 600
AGAGACCACG GAGAGCAATA AGAGTTCCAA CTCCCAGAGC CCATCTCCTC CCAGCAGCTC 660
CATCGCCTAC AGCTTCCTGA GTGCCAGCTC GGAGCAGGAC CACCCTTCCA CCAGCGGCTG 720
CAGCAGTGAG CAGTCTGCCA GGGTGAAGAC CCAGAAGGAG CTGATGAAGG CGTTAAAACA 780
CTTAAAGATC CGCCTTCCCT CAGAGAAGCG CAGCAAGGGG AAGTCCAACA CACTAGCCAC 840
GCTCCAGTAC GCGCTGTCCT GCGTCAAACA GGTACAAGCT AACCAGGAGT ATTACCAGCA 900
ATGGACAATC GAGGAAGACC AGCCCTGCTG TCTGGACCTG TCCACCTACA CGATAGCGGA 960
GCTGGAGAGG ATCACTTCGG AGTACACGCT CAAGAACTCG GACACTTTCT CAGTGGCCGT 1020
TTCCTTCATC ACCGGGAAGA TCCTGTACAT CTCGGACCAG GCGGCCTTCA TCCTGCGCTG 1080
TAAAAGAGAT GTCTTCAAAG GGGCCAAGTT TGTGGAATTC CTGGCCCCGC AGGATGTCAG 1140
CGTCTTCTAC AGCTCGACTG CACCGTACCG CTTGCCTTCG TGGAGCGTCT GCAGTGGAGC 1200
CGTGGCGGCT CCAATGGACT ACACCCAGGA GAAGTCTGTG TTTTGCCGAA TCAGTGGGGC 1260
CCGAGGCCGC GAGCACAAGC TGCGGTACCA TCCTTTCCGC CTCACGCCGT ACATGATGAA 1320
GGTGTGCGAC TCGGAGAATA TGGAAGGACA ACCGTGTTGT CTGCTGCTGG CCGAGAAGAT 1380
CCACTCAGGA TATGAAGCAT CCACAGCTCC CAGAATCCCT GCGGACAAGC GCATCTTTAC 1440
TACTAGACAC ACCCCCAGCT GTCTCTTTCA GGAAGTGGAT GAGAGGGCGG TACCGTTGCT 1500
AGGCTACCTG CCCCAGGATT TGATTGGCAC TCCAGTGCTG TTTTACCTCC ATCCTGAAGA 1560
CAGACCACTG ATGCTGACCA TTCATAAAAA AATACTGCAG TACGCTGGAC AGCCGTTCGA 1620
ACACTCGCCC ATCCGGTTTT GCGCTCGCAA TGGCGAGTAC GTCACCATGG ATACCAGCTG 1680
GTCCAGTTTT GTGAACCCGT GGAACAGGAA GGTGTCCTTC ATCATGGGCC GTCATAAAGT 1740
CCGCACTGCA CCCCTCAACG AGGACGTCTT CATGCCGCCC AAACCAGCTG ATCTGAAGCT 1800
GATGGGCTCA GACATCCAGG AGTTGACTGA ACAGATTCAC CGTTTGCTAC TGCAGCATCC 1860
AGTTCACAGT AACGGCTCCA TGGGTTACTG CAGCATCGGA AGCAGCACCT CCCACGAACA 1920
GTTCCTGAGC ATTGCCTCAT CCAGCGACGG TAACGGCATT CACACCGAGG AGGTGCAACT 1980
CAACAAGCCC ATGACGTTCC AGCAGATCTG TAAAGACGTC CACAAGGTGA AGAACCAAGG 2040
TCAGCAGGTC TTCATCGAGT CCAGGAGCAA ACTGCAGCCC AAGAAGCAGC CAACGACAGT 2100
GTCCGAGAAG CCAAAGGAAG CTATCACTCA ACTCAAGGAT TCTCCAAAGG AACCGGCAGC 2160
TTCGACACCA GGAAAACTGT CCATCTCGAA GCCTCCCACA CAGAAGGATC AGTCCTTGTA 2220
TTCCTATCAG CAAATAAACT GCCTGGACAG CATCATCAGA TACTTGGAGA ACTACAACAT 2280
CCCCAACGCG GTGAAGAGAA AGTGTGCTTC GTCTTGCTAC ACCACATCCT CGAGCTCCGA 2340
CAGCGACAAT CAGAAAGCGA GCGAAGACGC CCCCGCTGGT GCCGGCAGCA GGAAAGATAC 2400
AGCAGAGGGA CTGCTACCCG CCGCAGGGAG AGAATCTGAG ATAAAAGCAG CAGCAGGTGG 2460
TCCATCTGCA GTGGTGGGGG CGGTCCTGGC TCCGTTAGCG CTTGCCAGTC AGGCCGACAG 2520
CGTGGTCTCC GCCACTAGTC AGTGTAGCTT CAACAGCACT ATTGTCCACG TGGGAGACAA 2580
GAAGCCCCCA GACACCGGTA GGTACCAAGA GGGCCGCTTG GGGCAAGAAG AAACCTCCAA 2640
AAAAAAAAAA CCAAAACAGG TAGTAATACG TTATTTAGGA ATGTGCAGTT GCAAGAAAGT 2700
TCGTGGTTTT TCGTTACTTA TTCGTGACGC AGCTGAACTG AGTAGGTGTA AAAGTTCGGG 2760
TCTTGAGGGG TTATATACTC TCTCTCTTTT ATTTACTCCT TTCCATTGTT CTGTGATATT 2820
TTGCTTCTGC TTTTGGAATT TTCTCCATCG GATTTCATGT AAAACTCCAG AGTCCGGTGT 2880
TTGGTCGACT GTGATCTGGG AGAGGCCCCC CCCCCCTAAA AAACGCTGTG ACAGTGTCTG 2940
TTTAAAACAA GCGTGCAAAA ACGGCTGCCC TCTGGTGATC ATCTTCTTAC ACTGCAGTTG 3000
CAAAACTCAT GGTTGGGAAG CATTTGGACA GGAAGTCGCT GCTGCCATTT TAAAGCTAGA 3060
CGGTCTTGAG ACTGAATCAC CACCAGAGGA ACCACAAATA TTCCCATGGG AAACCATAGA 3120
TGTACCAAAG AATCATGCCC TTTGTATGAC CTTGGAGATC ATGCTGTGTA TAGACAGTGA 3180
AGGGACTATA CGAGTTATCC AGCTCCCTCT GATCTTTGCG TTTGGTTTGC TTACAGGAAG 3240
CAGCCAGAGC AGCAACACCA GCAAGTACTT TGGCAGCATC GACTCCTCGG AGAATGACCA 3300
CAATGCCAAG AAACTGGCCA AGATGGAGAA CAACGAGCAG TTCATCAAAT ACGTCTTGCA 3360
GGACCCAATC TGGCTGCTGA TGGCCAACAC GGATGACAAA GTCATGATGA CCTATCAGAT 3420
GCCAGTCAGG GATATGGCAA CAGTGCTGAG GGAAGACAAG GAGAAGCTGA AACTGATGCA 3480
GAAGCACCAA CCCAAGTTCA CAGAGAGCCA GAAGATGGAG CTGAGCACAG TCCATCCGTG 3540
GATGAAGAAG GGTCTTCTCC CTAAGGCCAT CGATGTTACG GCCTGTGCAG GCTGTGGTGG 3600
AAACGGCGCC ATCAGCGCGG CCACCCCGTA CGACGTGCAA GTTCACGACC TGGAGTTCTG 3660
CACCATGCTG GAGCCCATGG AGGAGGGGGG G 3691
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus58.53 0.00e+00 746.1
CGD-HoS-021038Homo sapiens (Human)58.7 0.00e+00 760.8
CGD-OvA-022197Ovis aries58.11 0.00e+00 748
CGD-RaN-021793Rattus norvegicus58.35 0.00e+00 765.4