CGDB Gene Information

Tag Content
CGDB ID CGD-PrC-056290
Ensembl Accession ENSPCAP00000005575.1
Protein Name PER1
Ensembl Information ENSPCAG00000005879; ENSPCAT00000005972
Organism Procavia capensis
NCBI Taxa ID 9813
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 12 ZT 0 LD >10 Predicted from orthologs Q65ZG8
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845](View all)
Protein Sequence
(Fasta)		 MSGPLEGADG GGDPRPGDVF CPGGSPSPEH PQHRPCPGPS LADDTDANSN GSSGNESNGP 60
ESRGASQRSS HSSSSGNGKD SALETTESSK STNSQSPSPP SSSIAYSLLS ASSEQDNPST 120
SGCSSEQSAR ARTQKELMMA LRELKLRLPP ERRGKGRSGT LATLQYALAC VKQVQANQEY 180
YQQWSLEEDE PCAVDMPTYT LEELEHITSE YTLRNQDTFS VAVSFLTGRI VYISEQAGIL 240
LRCKRDVFRG ARFSELLAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP RIPPDKRIFT 360
TRHTPSCLFQ DVDERAAPLL GYLPQDLLGA PVLLFLHPED RPLMLAIHKK ILQLAGQPFD 420
HSPIRFCARN GEYVTMDTSW AGFVHPWSRK VAFVLGRHKV RTVPLNEDVF TPPAPSTALS 480
LDPDIQELSE QIHRLLLQPV HSPSPAALCG VGSVTSPGPL LSPGSSSDSN GGDAEGPGPP 540
ALVTFQQICK DVHLVKHQGQ QLFIESRVRP PPWPRLPATD TLKAKALSCQ APDPELEVAP 600
APVHVPLALA PEEAERKEAS ACSYQQINCL DSILRYLESC NVPNTTKRKC ASSSSCTASS 660
ASDDDKQKTV PTPTSVKKDP SAVLSGEGAN PQKEPVVGGT LSPLALANKA ESVVSITSQC 720
SFSSTIVHVG DKKPPESDLI MMEDLPGLAQ GLAPSPALSP TVVPDLVQDA YRPVGLTKAV 780
LSLHTQKEEQ AFLSRFRELG RLRGLDSSSM APLAPGERGC HRGPIPPSRR HHCRSKAKRS 840
RHHQISRPEA PCYVSHPLPV PPSASWPPAP ATTPFSAVVQ PCPLSVFSPR GGPQSLPPAP 900
TSVPPAAFPA PLVTPMVALV LPNYLFPTPS SCPYAVPQAS AEGPSTPAFH SPSPSLPPLP 960
PSPSHCPDSP LFNSRCSSPL QLNLLQLEES PRAEGGAVTG APGSSAGPAP PTEEVSEPEA 1020
RLVEVTESSN QDMLSGSSDL LELLLQEDSR SGTGSAASGS LGSGLGSGSG SGSHEGGSTS 1080
ASITRSSQSS HTSKYFGSID SSEAEAGMAQ ARAEPGDQVI KYVLQDPIWL LMADADQHVM 1140
MTYQVPSRDM ASVLKEDRER LRAMQKQQPR FSEDQRKELG AVHSWVRKGL LPRALDVMAC 1200
VDCGSSSQDP GHPDDPLFSE LDVLGLEPME EGGGEGGGGS EGGGGEGGGG AGAHTGTRVS 1260
SSQDLAMEEE EEDGNSSSPA LPAPLVNGTS
Nucleotide Sequence
(Fasta)		 ATGAGTGGCC CCTTAGAAGG GGCTGATGGG GGAGGGGACC CCAGGCCCGG GGATGTCTTT 60
TGTCCTGGAG GGTCTCCATC CCCGGAGCAC CCACAGCACC GGCCTTGCCC AGGCCCCAGC 120
CTGGCCGATG ACACGGATGC CAACAGCAAT GGCTCAAGCG GCAATGAATC TAATGGTCCA 180
GAGTCCAGGG GTGCATCTCA GCGGAGCTCA CATAGCTCCT CCTCGGGCAA TGGCAAAGAC 240
TCAGCCCTGG AGACCACTGA GAGCAGCAAG AGCACAAACT CTCAGAGTCC ATCTCCACCC 300
AGCAGTTCCA TTGCCTACAG CCTTCTGAGT GCCAGCTCAG AGCAGGACAA CCCATCCACC 360
AGTGGCTGCA GCAGTGAACA GTCAGCCCGG GCGAGGACCC AGAAGGAACT CATGATGGCA 420
CTGCGGGAGC TGAAGCTTCG GCTGCCACCA GAGCGCCGGG GCAAGGGTCG CTCTGGGACC 480
CTGGCCACAC TCCAGTACGC ACTGGCCTGT GTCAAGCAGG TGCAGGCCAA CCAAGAATAT 540
TATCAGCAGT GGAGCCTGGA GGAGGATGAG CCCTGTGCCG TGGATATGCC TACCTATACC 600
CTGGAGGAGC TAGAGCACAT CACATCTGAG TACACACTGC GCAACCAGGA TACCTTCTCG 660
GTGGCTGTGT CCTTCCTGAC AGGCCGCATT GTCTACATTT CGGAGCAGGC AGGTATCCTG 720
CTGCGTTGCA AGCGAGATGT GTTCCGGGGC GCCCGCTTCT CAGAGCTCCT CGCNNNNNNN 780
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 840
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 900
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 960
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1020
NNNNNNNNNN NNNNNNNNNN NNNNNCTCCC CGGATCCCTC CTGACAAAAG GATTTTTACC 1080
ACTCGACACA CACCCAGCTG CCTCTTCCAG GATGTGGATG AGAGGGCTGC CCCACTGCTG 1140
GGCTACTTAC CCCAGGACCT CCTGGGGGCC CCTGTGCTGC TCTTCTTACA TCCTGAAGAC 1200
CGACCCCTCA TGCTGGCCAT CCACAAGAAG ATCCTCCAGC TGGCAGGTCA GCCCTTTGAC 1260
CACTCCCCTA TTCGCTTCTG TGCCCGAAAT GGGGAATATG TCACCATGGA CACCAGTTGG 1320
GCGGGCTTCG TGCACCCCTG GAGCCGCAAA GTGGCCTTCG TGTTAGGCCG TCACAAAGTT 1380
CGCACAGTAC CCCTGAATGA GGATGTCTTC ACTCCCCCGG CCCCCAGTAC AGCTCTGTCC 1440
CTGGACCCTG ATATCCAGGA GCTATCAGAG CAAATCCACC GGCTGCTGTT ACAACCCGTG 1500
CACAGCCCCA GTCCCGCTGC GCTCTGTGGA GTTGGCTCTG TCACGTCTCC AGGCCCTCTC 1560
CTCAGCCCTG GCTCCTCTAG TGATAGCAAC GGGGGAGATG CTGAGGGGCC TGGGCCTCCT 1620
GCCCTGGTGA CCTTCCAGCA GATCTGTAAG GATGTGCATC TGGTGAAACA CCAGGGGCAG 1680
CAGCTTTTTA TCGAGTCCCG GGTCCGGCCT CCACCGTGGC CCCGCCTCCC TGCTACAGAC 1740
ACACTCAAGG CAAAGGCCCT TTCCTGCCAG GCCCCAGACC CGGAGCTAGA GGTGGCCCCT 1800
GCCCCAGTCC ATGTCCCACT GGCCTTGGCA CCTGAGGAGG CTGAGAGGAA AGAAGCGTCT 1860
GCCTGCTCCT ACCAGCAGAT TAATTGCCTG GACAGCATTC TCAGGTACCT GGAGAGCTGC 1920
AATGTCCCCA ACACAACCAA GCGCAAGTGT GCCTCCTCCT CTTCCTGCAC CGCTTCCTCT 1980
GCCTCTGATG ATGACAAACA GAAGACAGTT CCCACTCCTA CGAGTGTCAA GAAAGATCCA 2040
TCGGCAGTGC TGTCTGGGGA GGGGGCCAAC CCTCAGAAGG AACCGGTGGT GGGAGGAACC 2100
CTGAGCCCGC TCGCCCTGGC CAATAAGGCA GAGAGCGTGG TGTCCATCAC CAGTCAGTGT 2160
AGCTTCAGTT CTACCATCGT CCATGTGGGA GATAAGAAGC CACCGGAGTC GGACCTCATC 2220
ATGATGGAGG ACCTGCCTGG CCTGGCCCAA GGCCTAGCGC CCAGCCCGGC CCTCAGCCCC 2280
ACAGTAGTCC CTGACCTAGT CCAAGATGCC TACCGCCCTG TGGGCCTGAC CAAGGCCGTG 2340
CTGTCCCTGC ATACACAGAA GGAGGAGCAG GCCTTCCTCA GCCGCTTCCG GGAACTTGGC 2400
AGACTGCGGG GACTGGACAG CTCTTCCATG GCACCACTGG CCCCTGGGGA GCGAGGCTGC 2460
CACCGTGGCC CCATACCCCC CAGCCGGCGA CACCACTGTC GATCCAAAGC CAAGCGCTCA 2520
CGTCACCACC AGATTTCCCG GCCTGAAGCC CCCTGCTATG TCTCACACCC CTTGCCTGTA 2580
CCACCCTCTG CCTCATGGCC CCCCGCACCA GCCACTACCC CTTTCTCAGC TGTGGTCCAG 2640
CCATGCCCTC TCTCAGTATT CTCCCCTAGA GGAGGCCCCC AGTCTCTGCC ACCAGCCCCC 2700
ACGTCAGTGC CTCCTGCAGC TTTCCCTGCC CCCTTGGTAA CGCCAATGGT GGCCTTGGTG 2760
CTCCCTAATT ATCTGTTCCC TACACCCTCC AGCTGTCCCT ATGCGGTACC CCAGGCCTCT 2820
GCTGAGGGGC CTTCTACCCC AGCTTTCCAC TCCCCTTCCC CATCTCTACC CCCGCTGCCC 2880
CCCAGCCCTT CCCACTGCCC AGACTCTCCA TTATTCAACT CGAGATGCAG CTCTCCTCTC 2940
CAGCTTAATT TGCTACAGCT TGAAGAGTCC CCTCGTGCTG AAGGGGGTGC TGTTACAGGG 3000
GCCCCTGGGA GCAGTGCTGG GCCCGCTCCC CCAACTGAGG AGGTCTCAGA GCCAGAGGCC 3060
AGACTGGTGG AAGTTACTGA GTCTTCTAAT CAGGACATGC TGTCGGGCTC CAGTGACCTG 3120
CTGGAGCTGC TGCTGCAGGA GGACTCGCGC TCTGGCACAG GCTCTGCTGC CTCGGGCTCC 3180
TTGGGCTCTG GCTTGGGCTC TGGGTCTGGC TCAGGCTCCC ATGAGGGGGG CAGCACCTCA 3240
GCCAGCATCA CTCGCAGCAG TCAGAGCAGC CACACAAGCA AGTACTTTGG CAGCATTGAC 3300
TCCTCTGAGG CTGAGGCAGG AATGGCCCAG GCCAGGGCTG AGCCTGGGGA CCAAGTCATT 3360
AAGTATGTGC TCCAGGATCC CATCTGGCTG CTCATGGCAG ATGCTGACCA GCATGTCATG 3420
ATGACCTACC AGGTGCCCTC CAGGGATATG GCCTCTGTGC TGAAGGAGGA CCGGGAGCGG 3480
CTCCGGGCCA TGCAGAAGCA GCAACCTCGG TTCTCGGAGG ACCAGCGGAA GGAACTGGGT 3540
GCTGTTCACT CCTGGGTCCG GAAGGGCCTG CTGCCTCGAG CCCTTGATGT GATGGCATGT 3600
GTGGACTGTG GTAGCAGCTC CCAAGACCCT GGCCACCCTG ATGACCCGCT TTTCTCAGAG 3660
CTGGATGTAC TGGGGCTGGA GCCCATGGAA GAGGGTGGAG GCGAGGGTGG TGGTGGCAGT 3720
GAAGGTGGAG GAGGTGAGGG AGGGGGCGGG GCTGGGGCCC ATACTGGGAC CAGAGTCTCT 3780
AGCTCTCAGG ACTTGGCCAT GGAGGAGGAG GAAGAAGATG GGAACTCATC CAGTCCAGCC 3840
TTACCTGCCC CCCTAGTAAA TGGTACCAGC TAG 3873
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-CaE-021686Caenorhabditis elegans28 1.90e-15 82.42
CGD-EqC-020994Equus caballus69.03 0.00e+00 1233.8
CGD-HoS-021038Homo sapiens (Human)68.84 0.00e+00 1226.5
CGD-OvA-022197Ovis aries65.25 0.00e+00 1153.3
CGD-RaN-021793Rattus norvegicus69.01 0.00e+00 1166
Gene Ontology

GO:0005515--protein binding
GO:0097167--circadian regulation of translation
GO:0043153--entrainment of circadian clock by photoperiod
GO:0009416--response to light stimulus
GO:2000323--negative regulation of glucocorticoid receptor signaling pathway
GO:0042752--regulation of circadian rhythm
GO:0002028--regulation of sodium ion transport
GO:0031490--chromatin DNA binding
GO:0000976--transcription regulatory region sequence-specific DNA binding
GO:0032922--circadian regulation of gene expression
GO:0051591--response to cAMP
GO:0007623--circadian rhythm
GO:0019900--kinase binding
GO:0070932--histone H3 deacetylation
GO:0010608--posttranscriptional regulation of gene expression
GO:0043966--histone H3 acetylation
GO:0000989--transcription factor activity, transcription factor binding
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0045892--negative regulation of transcription, DNA-templated
GO:0008134--transcription factor binding
GO:0045944--positive regulation of transcription from RNA polymerase II promoter
GO:0005634--nucleus
GO:0070888--E-box binding
GO:0042634--regulation of hair cycle
GO:0043967--histone H4 acetylation
GO:0031625--ubiquitin protein ligase binding
GO:0000978--RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005737--cytoplasm