CGDB Gene Information

Tag Content
CGDB ID CGD-SuS-066161
Ensembl Accession ENSSSCP00000028676.1
Protein Name PER1
Ensembl Information ENSSSCG00000017983; ENSSSCT00000032848
Organism Sus scrofa
NCBI Taxa ID 9823
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 21 ZT 9 LD 6 duodenum Predicted from orthologs Q8QGQ8
ZT 2 ZT 18 LD 3.17 embryos Predicted from orthologs Q8QGQ8
ZT 6 ZT 18 LD 8 embryos Predicted from orthologs Q8QGQ8
CT 12 CT 0 DD1 3 granulosa cells Predicted from orthologs Q8QGQ8
ZT 3 ZT 18 LD 84.29 pineal glands Predicted from orthologs Q8QGQ8
ZT 23 ZT 11 LD 2.25 spleen Predicted from orthologs Q8QGQ8
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845](View all)
Protein Sequence
(Fasta)		 MSGPLEGADG GGDPRPGESF CPGGAPSPGP PQHRPCPGPS LADDTDANSN GSSGNESNGP 60
ESRGASQRSS HSSSSGNGKD SALLETTESS KSTNSQSPSP PSSSIAYSLL SASSEQDNPS 120
TSGCSSEQSA RARTQKELMT ALRELKLRLP PERRGKGRSG TLATLQYALA CVKQVQANQE 180
YYQQWSLEEG EPCAMDMSTY TLEELEHITS EYTLRNQDTF SVAVSFLTGR IVYISEQAGV 240
LLRCKRDVFR GARFSELLAP QDVGIFYGST APSRLPTWGT GASAGSVLRD FAQEKSVFCR 300
IRGGPDRDPG PRYQPFRLTP YVTKIRVSDG APAQPCCLLI AERIHSGYEA PRIPPDKRVF 360
TTRHTPSCLF QDVDERAAPL LGYLPQDLLG APVLLFLHPE DRPLMLAIHK KILQLAGQPF 420
DHSPIRFCAR NGEYVTMDTS WAGFVHPWSR KVAFVLGRHK VRTAPLNEDV FTPPAPSPTL 480
ALDTDIQELS EQIQRLLLQP VHSPSPTGLC GVGPATSPGP LLSPGSSSDS NGGDAEGPGP 540
PAPVTFQQIC KDVHLVKHQG QQLFIESRAR PCPRPRLPAT GTFKAKTLPC QSPDLEVEAA 600
PAPSQVPPAL APEEAERKDA SSCSYQQINC LDSILRYLES CNLPSTTKRK CASSSSCTAS 660
SASDDDKQRP GPVSMGAKKD PSAVLSGEGA SPQKEPVVGG SLSPLALANK AESVVSVTSQ 720
CSFSSTIVHV GDKKPPESDI VMMEDLPGPP PGPAPSPTVA PDPAPDAYRP VGLTKAVLSL 780
HTQKEEQAFL SRFRDLGRLR GLDGSSTPPS APGCPHGPAP PSRRHHCRSK AKRSRHHQTP 840
RAEAPCCVSH PSPVPSSAPW PPPPAATPFP AVVQPFPLPM FSPRGGPQPL PAAPTAVPPA 900
PFSAPLVTPM VALVLPNYLF PNPSSYPYGV AQAPAEGPPT PASHSPAPSL PPLPPSPPHR 960
PDSPLFNSRC SSPLQLNLLQ LEEPPRVEAG AGAGGPGSSA GPPAPSQEAA EPEARLVEVT 1020
ESSNQDALSG SSDLLELLLQ EDSRSGTGSA ASGSLGSALG SGSGSGSHEG GSTSASITRS 1080
SQSSHTSKYF GSIDSSEAEA GAAQARAEPG DQVIKYVLQD PIWLLMANAD QRVMMTYQVP 1140
SRDMASVLKQ DRERLRAMQK QQPRFSEDQR RELGAVHSWV RKGQLPRALD VMACVDCGSS 1200
TQDPGHPDDP LFSEMDGLGL EPMEEGGGEG GEGEGGNEAR AQAGAGASSS QDLAMEEEEQ 1260
GGSSSSPALP ATEDGTN 1277
Nucleotide Sequence
(Fasta)		 GGGCGCTCGC GCGGCCAGGT GCTGGCTGTG ATCGAATTTC TCAATCCTCT GAGGCTTGAG 60
CCTCCCACTT CACTCCCCTA GTCAGGCCTC CTGGCCCCCT TGTGCATCCG TGGTGGCCTC 120
TCTGCCCTCC CTGTTCTCCT GCCCTCCCCA TGGCCCAGAC ATGAGCGGTC CCCTAGAAGG 180
GGCTGATGGG GGAGGGGACC CTAGGCCGGG AGAATCCTTC TGTCCTGGAG GGGCTCCATC 240
CCCTGGGCCT CCACAGCATC GACCTTGTCC CGGCCCCAGC CTGGCTGATG ACACGGATGC 300
CAACAGCAAT GGCTCCAGTG GCAATGAGTC CAATGGACCC GAGTCCCGGG GGGCATCACA 360
GCGGAGCTCA CATAGCTCCT CCTCGGGCAA TGGCAAGGAC TCGGCCCTGC TGGAGACCAC 420
TGAGAGCAGC AAGAGCACAA ACTCTCAGAG CCCATCCCCA CCCAGCAGTT CCATCGCTTA 480
CAGCCTCCTG AGTGCCAGCT CGGAGCAGGA CAATCCATCT ACCAGTGGCT GCAGCAGTGA 540
ACAGTCAGCC CGGGCAAGGA CCCAGAAAGA ACTCATGACG GCGCTGCGGG AGCTCAAGCT 600
TCGGCTGCCA CCAGAGCGCA GGGGCAAGGG CCGCTCTGGG ACCCTGGCCA CTCTGCAGTA 660
CGCGCTGGCC TGTGTCAAGC AGGTGCAGGC CAACCAGGAA TACTACCAGC AGTGGAGCCT 720
GGAGGAGGGC GAGCCTTGCG CCATGGACAT GTCTACCTAC ACCCTGGAGG AGCTGGAGCA 780
CATCACGTCC GAGTACACGC TTCGCAACCA GGATACCTTC TCCGTGGCCG TCTCCTTCCT 840
GACCGGCCGC ATCGTCTACA TTTCCGAGCA AGCAGGTGTC CTGCTGCGCT GCAAGCGGGA 900
TGTGTTCCGG GGTGCCCGCT TCTCAGAGCT CCTGGCTCCC CAGGACGTGG GCATCTTCTA 960
TGGCTCCACT GCCCCCTCTC GCCTGCCCAC CTGGGGCACG GGGGCCTCGG CAGGTTCAGT 1020
CCTGAGGGAC TTCGCCCAGG AGAAGTCCGT CTTCTGCCGC ATCAGGGGGG GTCCTGACCG 1080
AGACCCGGGG CCTCGGTACC AGCCATTCCG CCTCACCCCC TATGTGACCA AGATCCGGGT 1140
CTCGGATGGA GCCCCTGCAC AGCCCTGCTG CCTGCTCATC GCAGAGCGTA TCCACTCCGG 1200
TTATGAAGCG CCCCGGATTC CCCCCGACAA GAGGGTCTTC ACCACACGGC ACACGCCCAG 1260
CTGCCTCTTC CAGGACGTGG ATGAGAGGGC CGCCCCCCTG CTGGGCTACC TCCCCCAGGA 1320
CCTCCTGGGA GCCCCAGTGC TCCTTTTCCT GCACCCTGAG GACCGACCCC TCATGCTGGC 1380
CATCCACAAG AAGATCCTGC AGCTGGCTGG CCAGCCCTTT GACCACTCCC CTATCCGCTT 1440
CTGCGCCCGG AACGGGGAGT ACGTCACCAT GGACACCAGC TGGGCTGGCT TCGTACACCC 1500
CTGGAGCCGC AAGGTGGCCT TTGTGTTGGG CCGCCACAAA GTACGCACGG CGCCCCTGAA 1560
CGAGGACGTG TTCACTCCTC CGGCCCCCAG CCCCACTCTG GCCCTGGACA CCGATATCCA 1620
GGAGCTCTCA GAGCAGATCC AACGGCTGCT CTTACAGCCT GTGCACAGCC CCAGCCCCAC 1680
GGGGCTCTGT GGAGTCGGCC CTGCCACTTC CCCGGGTCCT CTCCTCAGCC CTGGCTCCTC 1740
CAGCGACAGC AACGGGGGGG ATGCTGAGGG ACCTGGGCCT CCTGCCCCGG TGACCTTCCA 1800
GCAGATCTGT AAGGACGTGC ACCTGGTGAA GCACCAGGGG CAGCAGCTCT TCATTGAGTC 1860
CCGGGCACGG CCCTGCCCCC GGCCTCGTCT CCCAGCTACG GGCACATTCA AGGCCAAGAC 1920
TCTTCCCTGC CAGTCCCCAG ACCTAGAGGT GGAGGCGGCC CCTGCTCCAA GCCAGGTCCC 1980
TCCAGCCTTG GCCCCTGAGG AGGCTGAGAG GAAAGACGCC TCCAGTTGCT CCTACCAGCA 2040
GATCAACTGC CTGGACAGCA TCCTCAGGTA CCTGGAGAGC TGCAACCTGC CCAGCACCAC 2100
CAAGCGCAAA TGCGCCTCCT CCTCCTCCTG CACCGCCTCT TCGGCCTCCG ACGACGACAA 2160
GCAGAGGCCA GGCCCCGTGT CTATGGGAGC TAAGAAAGAT CCGTCGGCAG TGCTGTCTGG 2220
GGAGGGGGCC AGCCCTCAGA AGGAGCCGGT GGTGGGAGGC AGCCTGAGCC CGCTCGCCCT 2280
GGCCAATAAG GCGGAGAGCG TGGTGTCCGT CACCAGTCAG TGTAGCTTCA GCTCCACCAT 2340
CGTCCATGTG GGAGACAAGA AGCCCCCGGA GTCGGACATC GTCATGATGG AGGACCTGCC 2400
TGGCCCGCCG CCCGGCCCGG CCCCCAGCCC CACGGTCGCC CCTGACCCAG CCCCAGACGC 2460
TTACCGCCCG GTGGGCCTGA CCAAGGCCGT GCTGTCCCTG CACACGCAGA AGGAGGAGCA 2520
GGCCTTCCTC AGCCGCTTCC GAGACCTTGG CAGGCTGCGT GGACTCGACG GCTCCTCCAC 2580
GCCCCCCTCA GCCCCTGGCT GCCCCCATGG CCCTGCACCC CCCAGCCGCC GACACCACTG 2640
CCGATCCAAA GCCAAGCGCT CACGCCACCA CCAGACCCCT CGGGCCGAAG CCCCCTGCTG 2700
TGTCTCCCAC CCCTCACCTG TGCCATCCTC TGCCCCCTGG CCCCCCCCAC CAGCCGCTAC 2760
TCCCTTCCCA GCTGTGGTCC AGCCCTTCCC CCTCCCCATG TTCTCCCCCA GAGGCGGCCC 2820
CCAGCCTCTC CCCGCCGCCC CCACAGCCGT GCCTCCTGCA CCTTTTTCTG CCCCCCTGGT 2880
GACCCCCATG GTGGCTTTGG TGCTCCCTAA CTATTTGTTC CCTAACCCAT CTTCCTATCC 2940
CTACGGGGTG GCCCAGGCCC CCGCCGAGGG GCCTCCTACT CCTGCTTCCC ACTCCCCGGC 3000
CCCGTCTCTG CCCCCGCTGC CCCCCAGCCC TCCACACCGC CCAGACTCTC CGCTCTTCAA 3060
CTCAAGATGC AGCTCTCCGC TGCAGCTGAA CCTGTTGCAG CTGGAGGAGC CCCCTCGTGT 3120
GGAGGCGGGG GCTGGAGCAG GGGGCCCTGG AAGCAGTGCT GGGCCCCCCG CTCCCAGCCA 3180
GGAGGCTGCT GAGCCAGAGG CCAGACTGGT GGAGGTAACT GAGTCCTCCA ACCAGGATGC 3240
GCTCTCGGGC TCCAGTGACC TGCTGGAGCT GCTGCTGCAA GAGGACTCGC GCTCTGGCAC 3300
AGGCTCTGCG GCCTCGGGCT CCTTGGGCTC TGCCTTGGGC TCGGGGTCTG GTTCAGGCTC 3360
CCACGAGGGG GGCAGCACCT CAGCCAGCAT CACACGCAGC AGTCAGAGCA GCCACACGAG 3420
CAAGTACTTC GGCAGCATCG ATTCTTCCGA GGCGGAGGCG GGGGCTGCCC AGGCCAGGGC 3480
TGAGCCCGGG GACCAGGTCA TCAAGTACGT GCTCCAGGAC CCCATCTGGC TGCTCATGGC 3540
CAACGCTGAC CAGCGCGTCA TGATGACCTA CCAGGTGCCC TCCAGGGACA TGGCCTCTGT 3600
GCTGAAGCAG GACCGGGAGC GGCTCCGGGC CATGCAGAAG CAGCAGCCTC GGTTCTCGGA 3660
GGACCAGCGG AGGGAGCTGG GGGCCGTGCA CTCCTGGGTC CGGAAGGGTC AGCTGCCTCG 3720
GGCTCTTGAC GTGATGGCCT GTGTGGACTG CGGCAGTAGC ACCCAAGACC CCGGCCACCC 3780
TGATGACCCG CTCTTCTCGG AAATGGATGG ACTGGGGCTG GAGCCCATGG AGGAGGGTGG 3840
CGGCGAGGGG GGTGAGGGTG AGGGTGGCAA TGAGGCCCGC GCCCAAGCTG GAGCCGGAGC 3900
CTCAAGCTCT CAGGACCTGG CTATGGAAGA GGAGGAACAG GGTGGGAGCT CGTCCAGTCC 3960
AGCCTTACCT GCCACAGAAG ATGGCACCAA CTAGACTGCA TTCGGGAGCC ACCCCCGGGC 4020
GTGTGTGAGA AGCTTCTCTC CCGTGTCGCA ACTATCCGCA CTCAGACGTG GCTGGACCAA 4080
CTGCTAGAAA AGTGCCCCAG CTTCTCCTGC TGTAGGGGGC AGGACCCCCG TCGCCGGCCC 4140
AGCATCCAGG GGCTGCCTCT GGCCTCCTAG GAGACAAAAG GATGGAATTC TTCAGCCCAG 4200
CTCAGCCTAG AGAAGCCTCC CTCCCCTCCC TAGTGAGGAG CCCAGCCTTC CCCTGGACAC 4260
GGTTGCGGAC AAGCTGAAGT GGTCTCTCCA AGTCCCAGCT GAGCCGGAAT CCCTGGCCCC 4320
GAGGGTTGGG GCTGCACTTA TTTATTGGGG AGATGGCCCT CTCTCCCACC TCCTCCCCAA 4380
GTGTGAGGGC GGGGGCTGGA GGCCCAAGCA GGACCCAGCG GTCCAAACCC CTAGCTGCTC 4440
CAGGGTGGGG GAGGTTGGTG GACCATGGAG TCCCTGGTGC TGCCCCTCAG GTGGGACCCA 4500
GACGTTCTCA GCTGTACCCT CTACCAGTGG CATTTGTGTT TTTGATATTG TGTCTGTTAT 4560
TATTTTTTAA TACAAAAAGA AAAAAAAATA
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus60.48 0.00e+00 1422.5
CGD-GaG-021834Gallus gallus47.51 5.00e-170 595.5
CGD-HoS-021038Homo sapiens (Human)61.4 0.00e+00 1459.5
CGD-OvA-022197Ovis aries62.94 0.00e+00 1420.6
CGD-RaN-021793Rattus norvegicus62.49 0.00e+00 1421.8