CGDB Gene Information

Tag Content
CGDB ID CGD-SaH-069946
Ensembl Accession ENSSHAP00000015608.1
Protein Name PER1
Ensembl Information ENSSHAG00000013301; ENSSHAT00000015736
Organism Sarcophilus harrisii
NCBI Taxa ID 9305
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
CT 0 CT 12 DD2 5.8 gluteal muscles Predicted from orthologs F7AU00
ZT 19 ZT 7 LD 2 muscle Predicted from orthologs H8ZXB9
ZT 4 ZT 21 LD 2 human HaCaT keratinocytes Predicted from orthologs O15534
CT 0 CT 12 DD2 4 U2OS cells Predicted from orthologs O15534
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 1 [Source:HGNC Symbol;Acc:HGNC:8845](View all)
Protein Sequence
(Fasta)		 MNGAVEGGSG AGGSGPGLGE GFDSRGSQSP GPPEHRPCPG PGLADDTDAN SNGSSGNESN 60
GPESQGTSQH SSHSSSSGHG KDSALLETTE SSKSTNSQSP SPPSSSIAYS LLSASSEQDN 120
PSTSGCSSEQ SARARTQKEL MTALRELKRR LPPERRGKGR SGTLATLQYA LACVKQVQAN 180
QDYYQQWKLE EGQSCSMDMS SYTLEELEHI TSEYTLRNQD TFSVAVSFLT GRIVYISDQA 240
AVLLHCKREV FRGVRFSELL APQDVGVFYG STAPSRLPTW GSRASAGSGP LDFTQEKSVF 300
CRIRGGPDQE LNPRYQPFRL TPYVTKIQLS DGAPVQPCCL LIAERIHSGY EAPRIPPDKR 360
IFTTRHTPSC LFQDVDERAA PLLGYLPQDL LGAPVLFFLH PEDRPLMLAI HKKILQLSGQ 420
PFDHSPIRFC ARNGEYVTMD TSWAGFVHPW SRKVAFVLGR HKVRTAPLNE DVFTPPAPVP 480
IPTRAMDSDI QELSEQIHRL LLQPVHSVSP TGMCGLGPPT SPGAFLSPGS SSDSNGGDID 540
HPGPPVPVTF QQICKDVHLV KHQGQQLFID SRSQPNWPPC SALGTFKTRD LLCKPLEPAP 600
ALNQVRPHVN TVPEDSERKE PSSCSYQQIN CLDSIIRYLE SCNVPNTVKR KCTSSSYTTS 660
STSDDDRQKT GQGSGVPKKD PPEELSREGA PLQKEPVVGG SLTPLTLANK AESVVSITSQ 720
CSFSSTIVHV GDKKPPESDI VMMEELPGLT SGPAPSPTMA IPDPNPDAYR PVGLTKAVLS 780
LHTQKEEQAF LTRFRDLSRL RVFDTPSVGT SPSINRGCCH GPTPPGRRHH GKSKAKRLRH 840
HQLPLTEAPG YTSYPSPTPL TTPWTSQPNP PTSAAFPTVV QTYPLPIFST RSCPQPSAST 900
PSLSPFSSPL VTPMVALVLP NYLFPSTPTS YSSGVPQVLS DRPLTPVPCS SSPTLPPMPT 960
SSPQCPDSPL FNSRCSSPLQ LNLLQLEETT RGERGTTVCE PGNNSRPSPP REEATQPETG 1020
LVEMNESSNQ DALSGSSDLL ELLLQEDSRS GTGSAASGSL ASGSGSRGGS TSASITRSSQ 1080
SSHTSKYFGS IDSSEAEAST AQVGVDPGTG PGEQVIKYVL QDPIWLLMAN ADHRVMMTYQ 1140
VPSRDTASVL QQDRERLRAM QKQQPRFSEE QRRELGAVHA WVRKGQLPQA LDVMACIDCG 1200
SSTPGPQYPD DTLFPELDGL GLEPMEEDGG GASPDTAMDE EEQGEEQMKS IMLKPSTSSN 1260
FEICFCLSGS QGEVPLNIDP F 1281
Nucleotide Sequence
(Fasta)		 CAATAGCAGA CGTGCGTGGA CCGACACAGG GGGCGGGCCA GCGGCACGCG GATTGGGGCA 60
TGGGTCGGGC GCGCCCAGGC CAATGAGCGC GTCAAGGGCG TGGCGTCCGG GCAGAGAGGC 120
GGTGCTATCC CGCGCGGACT CGGTAGGGGG CTGCTCTTGG TGGAACCGAC CTGGACCCTT 180
AGACAGAAAG AGTATTGTGT GCTTGAGCCC AGACCCTCGA TCTTCGGAAA CCCGGATCTC 240
TGCTGAAACC TGGAGAGCGG TTCCAGCAGT GATCCCTCCC CACAGTCCTC ACTGACTTCA 300
CCTTTTGCCA CTTCTTCCCT CCCTTCTTAC TGACCAAGGC AACACCTGGC CTTAAGGGCC 360
TTATTGTATT CCCTCGTGGT GGCCTCTCCC CCTTCACTGA TTTTTTCCCC CTGTCCTCCC 420
CATGGTACCA CCATGAATGG CGCTGTTGAG GGAGGCAGTG GGGCAGGGGG TTCAGGCCCT 480
GGGCTTGGTG AAGGGTTTGA TTCAAGGGGC TCCCAATCCC CTGGCCCCCC CGAACACAGA 540
CCCTGCCCTG GTCCTGGCCT AGCAGATGAC ACAGATGCAA ACAGCAATGG TTCAAGTGGC 600
AATGAATCCA ATGGACCAGA ATCCCAGGGT ACCTCCCAGC ATAGTTCTCA CAGCTCCTCT 660
TCTGGCCATG GGAAGGACTC TGCCCTGCTG GAGACAACAG AGAGCAGCAA AAGCACCAAC 720
TCTCAGAGCC CATCTCCTCC AAGCAGTTCC ATTGCTTACA GCCTTTTAAG TGCCAGCTCT 780
GAGCAGGATA ACCCATCAAC CAGTGGCTGC AGCAGTGAGC AGTCAGCCCG GGCACGAACA 840
CAGAAGGAGC TGATGACCGC TCTCCGAGAA CTAAAACGTA GACTTCCACC AGAACGCCGA 900
GGGAAGGGTC GATCAGGAAC TTTGGCCACC CTGCAATATG CACTTGCCTG TGTTAAACAA 960
GTACAGGCCA ATCAAGATTA CTACCAGCAG TGGAAGTTAG AGGAAGGGCA ATCTTGTTCC 1020
ATGGACATGT CCAGCTATAC ATTGGAGGAG TTAGAACACA TCACATCTGA GTATACTCTC 1080
CGAAATCAGG ATACTTTCTC TGTGGCTGTC TCTTTTCTCA CTGGCCGGAT TGTCTACATT 1140
TCGGATCAGG CAGCTGTTCT TCTGCACTGT AAGAGAGAAG TCTTCCGGGG TGTGCGGTTC 1200
TCAGAGCTGT TGGCCCCCCA GGATGTAGGT GTCTTCTATG GCTCCACTGC CCCATCTCGT 1260
CTGCCCACGT GGGGTTCCCG GGCCTCTGCT GGTTCAGGCC CCTTGGATTT CACACAGGAG 1320
AAATCAGTCT TCTGCAGGAT CAGAGGTGGC CCAGATCAGG AACTAAATCC CCGCTACCAG 1380
CCATTTCGAC TGACCCCCTA TGTGACTAAG ATCCAGCTTT CAGATGGAGC CCCAGTGCAA 1440
CCATGCTGTC TGCTAATTGC TGAACGAATT CATTCTGGCT ATGAGGCTCC CAGAATTCCT 1500
CCAGACAAGA GGATCTTCAC TACACGGCAC ACACCCAGCT GTCTGTTCCA AGATGTAGAT 1560
GAGAGGGCTG CCCCATTGCT GGGATATTTG CCTCAGGACC TTTTGGGGGC ACCAGTACTC 1620
TTTTTCTTGC ACCCTGAAGA CCGACCTCTC ATGTTGGCAA TTCACAAAAA AATTTTGCAG 1680
CTATCAGGCC AACCTTTTGA CCACTCCCCT ATCCGCTTCT GTGCCCGAAA TGGAGAATAT 1740
GTCACCATGG ACACCAGTTG GGCTGGCTTT GTCCATCCCT GGAGCCGAAA AGTAGCCTTT 1800
GTTTTGGGTA GACACAAAGT TCGAACGGCT CCCCTAAATG AGGATGTATT CACTCCCCCA 1860
GCTCCTGTCC CAATCCCCAC AAGAGCTATG GATTCAGATA TCCAGGAGCT CTCAGAACAG 1920
ATCCACCGAC TTTTGCTTCA GCCAGTCCAC AGTGTGAGTC CCACAGGAAT GTGTGGATTA 1980
GGCCCTCCAA CCTCTCCAGG TGCCTTTTTA AGCCCTGGCT CATCTAGCGA CAGCAATGGT 2040
GGAGATATTG ATCATCCTGG ACCCCCTGTT CCAGTGACAT TCCAACAGAT CTGTAAAGAT 2100
GTGCATCTTG TGAAGCACCA AGGGCAGCAG CTTTTCATTG ATTCTCGGTC CCAACCCAAC 2160
TGGCCTCCAT GCTCAGCCCT AGGTACATTC AAGACCAGGG ACCTCCTCTG CAAACCCTTG 2220
GAACCAGCCC CTGCACTGAA CCAGGTTCGG CCTCATGTCA ATACTGTCCC TGAGGATTCA 2280
GAGAGAAAAG AGCCATCCAG TTGTTCCTAC CAGCAAATCA ATTGCCTGGA CAGCATCATC 2340
CGTTACCTGG AGAGCTGTAA TGTCCCCAAT ACAGTGAAAA GGAAATGTAC CTCTTCCTCC 2400
TACACGACAT CGTCCACCTC TGATGATGAC CGACAGAAGA CTGGGCAGGG TTCTGGAGTG 2460
CCCAAAAAAG ATCCACCAGA AGAATTGTCT CGGGAGGGGG CCCCCCTCCA GAAGGAGCCA 2520
GTGGTGGGAG GCTCACTGAC CCCGCTTACC CTTGCCAATA AGGCGGAGAG TGTGGTATCC 2580
ATCACCAGTC AGTGTAGCTT CAGCTCTACT ATCGTCCATG TAGGAGACAA GAAGCCCCCG 2640
GAGTCGGATA TTGTCATGAT GGAAGAATTG CCTGGCTTGA CCTCTGGTCC AGCTCCCAGT 2700
CCAACAATGG CTATTCCTGA CCCTAATCCT GATGCCTACC GCCCTGTGGG ATTGACCAAA 2760
GCGGTACTGT CACTTCATAC ACAGAAGGAG GAGCAGGCTT TCCTCACCCG ATTTCGGGAT 2820
CTCAGCAGAC TCCGTGTGTT TGATACCCCT TCTGTAGGAA CATCACCCTC TATCAATCGA 2880
GGCTGCTGCC ATGGTCCTAC CCCTCCTGGT CGCCGCCACC ATGGCAAATC AAAAGCCAAA 2940
CGTTTAAGGC ACCACCAGCT TCCTCTGACT GAAGCCCCTG GCTATACCTC TTATCCTTCC 3000
CCAACACCTC TGACCACTCC ATGGACCTCT CAACCCAACC CACCCACATC TGCTGCTTTC 3060
CCAACAGTGG TGCAAACCTA CCCTCTTCCC ATTTTTTCAA CCAGAAGTTG CCCCCAACCA 3120
TCAGCTTCTA CGCCATCTCT TTCGCCCTTT TCTTCCCCCT TAGTAACTCC TATGGTAGCC 3180
TTGGTCCTAC CTAATTATTT GTTCCCTTCT ACCCCCACTA GTTATTCATC TGGGGTTCCT 3240
CAAGTTCTAT CAGATAGGCC TCTCACCCCT GTACCCTGTT CATCTTCCCC CACTTTACCT 3300
CCTATGCCAA CCAGCTCTCC CCAATGCCCT GATTCACCCC TGTTCAACTC ACGGTGCAGT 3360
TCCCCACTCC AGTTGAATTT GCTGCAGCTT GAGGAGACTA CCCGGGGGGA AAGGGGAACA 3420
ACAGTTTGTG AGCCTGGGAA CAATTCTAGG CCATCCCCTC CAAGAGAGGA GGCTACACAG 3480
CCAGAGACTG GACTGGTGGA GATGAATGAA TCCTCTAATC AGGATGCACT GTCAGGCTCC 3540
AGTGACCTGT TGGAGCTATT GCTCCAGGAG GACTCCAGAT CTGGCACTGG CTCAGCTGCT 3600
TCCGGCTCCC TGGCTTCTGG CTCTGGTTCC CGTGGTGGGA GCACCTCAGC CAGCATCACC 3660
CGAAGCAGCC AGAGTAGTCA CACCAGCAAA TACTTTGGGA GTATCGACTC CTCTGAGGCT 3720
GAGGCATCAA CAGCTCAGGT TGGGGTGGAC CCAGGCACAG GACCTGGGGA GCAGGTCATT 3780
AAGTATGTTC TGCAAGATCC CATCTGGTTA CTCATGGCTA ATGCTGACCA TAGGGTCATG 3840
ATGACTTATC AAGTGCCCTC CAGGGATACA GCTTCCGTGC TGCAACAAGA TCGAGAGAGG 3900
CTCCGCGCCA TGCAAAAACA ACAGCCTCGG TTTTCAGAAG AGCAGCGTAG GGAACTGGGT 3960
GCTGTGCATG CCTGGGTACG GAAGGGTCAG CTGCCCCAGG CCCTGGATGT GATGGCTTGT 4020
ATAGATTGTG GTAGCAGCAC CCCAGGTCCC CAGTATCCAG ATGATACACT TTTCCCTGAG 4080
CTGGATGGGT TGGGGCTAGA GCCAATGGAG GAAGATGGGG GTGGGGCCTC CCCAGACACA 4140
GCCATGGATG AAGAGGAACA AGGGGAAGAA CAAATGAAAA GCATCATGCT CAAGCCATCA 4200
ACCAGTTCCA ACTTTGAGAT TTGCTTCTGC CTTTCAGGCA GCCAGGGAGA GGTACCCCTG 4260
AATATCGACC CTTTCTAGTT GAACAATCAC AATCCTGTCT CTTCCTTAGG GACAATGGAG 4320
GGTAAGCGGT TGGGGCTTCT TAGGGATCAG CCAGAAAAAG AAGTCTCCCT CTTCATCCTA 4380
TTGGAGACAA TTCCACCAAC GAAAGAATAT ATTCTATTCA AAAAGTAGGA TATCTTTTTA 4440
AATTCCCACT GAGCAGGAAC ACTGAGTCCT GCTTCAGGGG TGGGAACTCT GACAATACTT 4500
ATTAGGGAAC TCTCCCTTTG GCTTTTCCTC AAAGGCCTGA GTCTTTCCCC ACCCCATCCC 4560
CCACTCTTGG CATGGAAGGG GAGAGGTTGG GTGTCAGGGA ATGAATACCT GCAGCCCTGG 4620
CAGGACCCAG ATAGCCTGAT GGTTAGCTCT CTTGGGTTGG GGAGAGTAGA AGACTATGGG 4680
TCCCTGGTGC TGCTGCCCCT TAGGGTGGGA CCCAGGTGTC TTCAGCTCCC CTTATTGATA 4740
TTTTTGTGTT TTTGATAGTC ATGTCTGTCT CTTTTGATAT AAAACAGAAA ACCTGTAACT 4800
AGACATTGTG GCATGAAGTC TGTTGGGAAC GAGGGCTGTT ATCATTTCAG TTGTTCTCAA 4860
TTCAATTTGA CAAAAATCTA CCAGGCATAT AATTCAAGAT TATAATTGAA TTGGGGGAGG 4920
AGCATGTGCA GGGTTACACC AATCCTAGGT TGGCTGGGAC TTGTGGAGTT TACATTTGTA 4980
TAAAGACAAA ACTAATTAGC TGGGAGGAGG GGCACAATAT GTAAACAAGA CTGAACTCAA 5040
TCCTGATATT CACATATTGA TTACTGAAAT TGGAGAGGTC CTGAGATTCT TCTGATTCTT 5100
CCCTCCCCCT TTTTTTTTAA TGGAAGAAAC TTAGAGTGAT TTGTTCTAGA CTATACAGCT 5160
AATAAGGGGC AGAAATGAAA CTACAACCTC CATCTTAATC CAGTGTACTC ACTTCACTCT 5220
CACCCCTGTC ACACTAAGCA CAAACACTCA GGCATCTAGG AGCTGGGCTA CTTGCTCCGC 5280
TTCTGGTCGA ATAAGTAAAT GGGAGACTAA CCACAGCATA ATTGCAAGCA AGAAGAGGGT 5340
GGCGAGGAGG CCTGTCCTCA AATAGCCTCC TACCCTCTTT TTCTAACAGG ATCTGGACTC 5400
TCAGGTTTAA CATCCTTCAC ACTTTCCTTC AGACCCCAGA GGCCAGGGTG CAGCTCTCTA 5460
TTGTAAGGTG GGGAAGGCTC CCAGATTTCT AGGTCTATTA ACTAATCACC TCAAAGCTGT 5520
TTCACCTTTT TCTCTGAATA CGAGAACATG AAAAACTACT AATTACCCTT GCTTGACACC 5580
ACCATCATCC ACATCCTCAG AACTGATGAA GCCTGCTAAT TATGGAGAGG AATGGGGTAG 5640
GCTTTGGAAG GATTATTGGA TTCTGCCCCA AAAGTGGGTG CGTGCGTGCG TGTGTGTGTG 5700
TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTTGG GATGACCAAA GATCCTGCCC 5760
TAAAGAGTGA GTGAGAGAGA GAGAAAAATA CAGAGACATA GGAGCTTATC CTCGTCGCGG 5820
TCGAAAAACA CTAGTGAATG TGCAGAACAC TTTTAAGTTC TAGGAACCCC AAACATCCAA 5880
TTTGCAAAAT GTTTTTTTCA CCCTAACTAC GTTGCGGCTA ATGCACCTAA GAAACCACCT 5940
AAGAAACGAG TTCTCTGGGT TCGGATCCCA GCCGCGCTGC ATCTTGGTAA AAGGCGTCTC 6000
TGGTTTATTG CTGCCGCAGT GATTGCGCAC ACTCCGATGG GCAGGGCTCC CTGCTCGGAT 6060
CG 6062
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020994Equus caballus62.09 0.00e+00 1441
CGD-GaM-021007Gadus morhua54.15 0.00e+00 661.8
CGD-HoS-021038Homo sapiens (Human)61.9 0.00e+00 1437.2
CGD-OvA-022197Ovis aries61.96 0.00e+00 1394
CGD-RaN-021793Rattus norvegicus62.8 0.00e+00 1411.7
Gene Ontology

GO:0005515--protein binding
GO:0043966--histone H3 acetylation
GO:0019900--kinase binding
GO:0070888--E-box binding
GO:0042634--regulation of hair cycle
GO:0032922--circadian regulation of gene expression
GO:0043967--histone H4 acetylation
GO:0007623--circadian rhythm
GO:0031625--ubiquitin protein ligase binding
GO:0000978--RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005737--cytoplasm
GO:0097167--circadian regulation of translation
GO:0043153--entrainment of circadian clock by photoperiod
GO:0009416--response to light stimulus
GO:2000323--negative regulation of glucocorticoid receptor signaling pathway
GO:0042752--regulation of circadian rhythm
GO:0002028--regulation of sodium ion transport
GO:0031490--chromatin DNA binding
GO:0000976--transcription regulatory region sequence-specific DNA binding
GO:0051591--response to cAMP
GO:0070932--histone H3 deacetylation
GO:0010608--posttranscriptional regulation of gene expression
GO:0000989--transcription factor activity, transcription factor binding
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0045892--negative regulation of transcription, DNA-templated
GO:0008134--transcription factor binding
GO:0045944--positive regulation of transcription from RNA polymerase II promoter
GO:0005634--nucleus