CGDB Gene Information


Tag Content
CGDB ID CGD-MuM-021078
Uniprot Accession O70361; O70361; PER3_MOUSE; A2A894
Protein Name Period circadian protein homolog 3
Gene Name Per3
Ensembl Information ENSMUST00000103204; ENSMUSP000000994
Genbank Protein ID NP_035197.2
Genbank Nucleotide ID NM_011067.3
EMBL (Genbank) ID AAC40147.1
Organism Mus musculus (Mouse)
NCBI Taxa ID 10090
Circadian Information
Evidence Phase Amplitude
(FOLD)
Sentence Tissue/Cell Data type PMID
Peak Trough External
condition
High-throughput CT 22 CT 14 DD2 6.10 Identified over 3,000 different transcripts in the mouse liver that cycle with a period length of approximately 24 hours. liver Microarray [1]
High-throughput CT 9 CT 2 DD2 31.13 Identified over 3,000 different transcripts in the mouse liver that cycle with a period length of approximately 24 hours. NIH3T3 Microarray [1]
High-throughput CT 12 CT 0 DD1 1.27 The circadian clock modulates renal function and identifies the 20-HETE synthesis pathway as one of its principal renal targets. kidney Microarray [1]
High-throughput ZT 13 ZT 1 LD 4.58 Peripheral circadian desynchrony marks an early event in the metabolic disruption associated with chronic shiftwork. liver Microarray [1]
High-throughput ZT 10 ZT 18 LD 5.84 Mice are most sensitive to UVB-induced DNA damage in the epidermis at night. telogen epidermis Microarray [1]
High-throughput CT 11 CT 23 DD1 3.70 Circadian disruption (e.g., during aging) may compromise tissue homeostasis and increase susceptibility to joint damage or disease. cartilage tissue Microarray [1]
High-throughput ZT 12 ZT 0 LD 11.53 It is specifically the nutritional challenge, and not the development of obesity, that causes the reprogramming of the clock and the effects of diet on the clock are reversible. liver Microarray [1]
Small-scale ZT 8 ZT 0 LD 2.46 The circadian clock is subject to food entrainment. Since PPAR浼 epididymal white adipose tissue Small-scale [1]
Small-scale ZT 8 ZT 0 LD 4.60 The expression profile of the negative circadian transcriptional regulators, Per1 and Per3, displayed mean acrophases of ZT11.4 and ZT10.6, respectively, reflecting an ~10 hr time difference relative to Bmal1 and Npas2. The amplitudes of Per1 and Per3 were similar between wild type and PPARα-null mice in all tissues except eWAT. brown adipose tissue Small-scale [1]
Small-scale ZT 8 ZT 0 LD 23.00 The expression profile of the negative circadian transcriptional regulators, Per1 and Per3, displayed mean acrophases of ZT11.4 and ZT10.6, respectively, reflecting an ~10 hr time difference relative to Bmal1 and Npas2. The amplitudes of Per1 and Per3 were similar between wild type and PPARα-null mice in all tissues except eWAT. liver Small-scale [1]
Small-scale ZT 8 ZT 4 LD 5.20 The expression profile of the negative circadian transcriptional regulators, Per1 and Per3, displayed mean acrophases of ZT11.4 and ZT10.6, respectively, reflecting an ~10 hr time difference relative to Bmal1 and Npas2. The amplitudes of Per1 and Per3 were similar between wild type and PPARα-null mice in all tissues except eWAT. heart Small-scale [1]
Small-scale ZT 12 ZT 0 LD 10.00 The genes encoding components of the positive arm of the core circadian feedback loop (Clock, Bmal1) in the femur of sham-operated mice displayed acrophase at ~16:00 and 18:30, respectively, and were ~4-7 h out of phase relative to genes encoding components of the negative arm of the core circadian feedback loop (Cry2, Per 3) (~11:00). femur vertebra Small-scale [1]
Small-scale ZT 8 ZT 0 LD 14.00 The genes encoding components of the positive arm of the core circadian feedback loop (Clock, Bmal1) in the femur of sham-operated mice displayed acrophase at ~16:00 and 18:30, respectively, and were ~4–7 h out of phase relative to genes encoding components of the negative arm of the core circadian feedback loop (Cry2, Per 3) (~11:00). lumbar vertebra Small-scale [1]
Small-scale ZT 12 ZT 0 LD 35.00 Negative regulators for the BMAL-CLOCK heterodimer (such as Per1, Per2, Per3, Cry1 and Cry2) had a similar expression pattern, i.e. a peak at early/mid-dark phase (Per1, Per3 and Cry2 at 19:00, or Per2 and Cry1 at 23:00) in jejunum of mice. jejunum Small-scale [1]
Small-scale CT 0 CT 12 DD2 8.80 Lithium reduced the expression of Per3 in NIH-3T3 cells. NIH-3T3 cells Small-scale [1]
Small-scale CT 9 CT 21 DD1 2.00 The mPer3 RNA rhythm was very similar to the phase of mPer1 and mPer2 rhythms in the SCN. SCN Small-scale [1]
Small-scale CT 15 CT 3 DD1 4.00 The phase of the circadian oscillations in mPer RNA levels in the three peripheral tissues (liver, skeletal muscle and testis) was more similar to that in retina than in the SCN. liver Small-scale [1]
Small-scale CT 15 CT 3 DD1 2.00 The phase of the circadian oscillations in mPer RNA levels in the three peripheral tissues (liver, skeletal muscle and testis) was more similar to that in retina than in the SCN. testis Small-scale [1]
Small-scale ZT 8 ZT 16 LD 2.50 The amount of mPer3 mRNA began to increase in the morning, increasing steadily to the point of highest accumulation at ZT8. SCN Small-scale [1]
DescriptionOriginally described as a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in gene expression, which are translated into rhythms in metabolism and behavior. It is derived from the Latin roots ''circa'' (about) and ''diem'' (day) and acts as an important regulator of a wide array of physiological functions including metabolism, sleep, body temperature, blood pressure, endocrine, immune, cardiovascular, and renal function. Consists of two major components: the central clock, residing in the suprachiasmatic nucleus (SCN) of the brain, and the peripheral clocks that are present in nearly every tissue and organ system. Both the central and peripheral clocks can be reset by environmental cues, also known as Zeitgebers (German for ''timegivers''). The predominant Zeitgeber for the central clock is light, which is sensed by retina and signals d(View all)
PTM Sites
Count: 10
(View all)
PositionPeptideTypePMID
391 TRIKKAASNDKDIAE phosphorylation 40555748; 22135298
542 CIDSVIRYLTSYSLP phosphorylation 20139300; 16381945; 23193290; 18505436; 22135298; 18506214
547 IRYLTSYSLPALKRK phosphorylation 20139300; 16381945; 23193290; 18505436; 22135298; 18506214
714 YSCVQAGSTAKHSRC phosphorylation 23684622
719 AGSTAKHSRCAGSER phosphorylation 40513073; 22135298; 23684622
899 EENWEAHSEELPFIS phosphorylation 25338131
906 SEELPFISSRSSSPL phosphorylation 25338131
909 LPFISSRSSSPLQLN phosphorylation 25338131
910 PFISSRSSSPLQLNL phosphorylation 25338131
911 FISSRSSSPLQLNLL phosphorylation 25338131
Protein Sequence
(Fasta)
MDPCGDPAVP GGDCPQTRGP GLQGASGQEG PLQGTCVDSS HSEHEDRNRM SEELIMVVQE 60
MKKYFPAERH TKPSTLDALN YALRCVHSVQ ANSDFFQSLG PRGAHQADVT VYSLEDLTAL 120
ASEHTSKNTD TFAAVFSFLS GRLVHISEQA ALILNSKRGF LKSVHFVDLL APQDVRAFYA 180
HTAPTQLPFW NNWTQRASQY ECAPAKPFFC RICGGGDREK RHYSPFRILP YLVHVHSSAQ 240
PEPEPCCLTL VEKIHSGYEA PRIPVDKRIF TTTHTPGCVF LEVDERAVPL LGYLPQDLIG 300
TSILTYLHPE DRPLMVAIHQ KVLKYAGHPP FEHSPVRFCT QNGEYVILDS SWSSFVNPWS 360
RKVSFIIGRH KVRTSPLNED VFATRIKKAA SNDKDIAELQ EQIHKLLLQP VHASASSGYG 420
SLGSSGSQEQ HVSITSSSES SGHCPEEGQH EQMTLQQVYA SVNKIKNVGQ QLYIESMARS 480
SVKPVAETCV EPQGGDEQKD FSSSQTLKNK STTDTGSGGN LQQEQPSSSY QQMNCIDSVI 540
RYLTSYSLPA LKRKCISCTN TSSSSEEAKP IPEVDSSQRD TEQLLDIRKQ ETTGPSTDIE 600
GGAARTLSTA ALSVASGISQ CSCSSTSGHA PPLQSESVAV ACKPWALRTK ASHLAAGGFK 660
HVGLTAAVLS AHTQKEEQNY VDRFREKILT SPYGCYLQQE SRNRAQYSCV QAGSTAKHSR 720
CAGSERQKHK RKKLPAPVDT SSPGAHLCPH VTGLLPDEQH WGPSASPSPL GAGLAFPSAL 780
VVPSQTPYLL PSFPLQDMAS QGVGVSAAWG AAAGCPPLSA GPQAVAAFPS AYVDTLMTIF 840
LHNAPLFPLW PPSFSPYPSL GAAGSSELAP LVPAMAPNPE PTTSGHSQRR VEENWEAHSE 900
ELPFISSRSS SPLQLNLLQE EMPAPSESAD AVRRGAGPDA KHHCVTGPSG SRSRHCTSGE 960
LATATAQQES AAASGSSASS IYFSSTDYAS EVSENRQRPQ DRQRDEALPG AAEESIWRMI 1020
ERTPECVLMT YQVPERGREE VLKQDLEKLQ SMEQQQPLFS PAQREELAKV RSWIHSHTAP 1080
QEGHLQSCVA CEDRGSVGDT AEVLEQHPAE DTS 1113
Nucleotide Sequence
(Fasta)
ATGGATCCCT GTGGAGACCC GGCAGTACCT GGTGGCGACT GTCCCCAGAC TAGGGGACCG 60
GGGCTCCAGG GGGCGTCTGG CCAGGAGGGT CCTCTGCAGG GCACTTGCGT GGACAGCAGC 120
CACAGTGAAC ACGAAGACCG AAACAGAATG TCTGAAGAGC TTATAATGGT TGTCCAAGAA 180
ATGAAAAAGT ATTTCCCAGC CGAGAGGCAC ACTAAGCCCA GTACCCTAGA TGCTCTTAAC 240
TATGCCCTGC GCTGTGTACA CAGTGTGCAA GCAAACAGTG ACTTTTTCCA GAGTCTCGGT 300
CCACGCGGAG CACACCAGGC AGATGTGACT GTATACAGTC TTGAGGACCT CACCGCTCTG 360
GCTTCTGAAC ATACTTCTAA GAACACAGAT ACCTTCGCGG CCGTGTTTTC GTTTCTGTCT 420
GGAAGGTTAG TGCACATTTC TGAGCAGGCT GCTTTGATCC TGAATTCTAA GAGGGGTTTC 480
CTCAAGAGCG TGCACTTTGT CGACCTGCTT GCCCCTCAAG ACGTGAGGGC GTTCTACGCG 540
CACACTGCTC CAACTCAGCT TCCTTTCTGG AACAACTGGA CCCAAAGAGC CTCGCAGTAT 600
GAATGTGCAC CAGCGAAACC CTTTTTCTGC AGAATCTGTG GAGGTGGAGA CAGAGAGAAG 660
AGGCATTACT CCCCATTCCG GATCCTCCCC TATTTGGTTC ATGTACATAG CTCTGCCCAG 720
CCAGAACCAG AGCCTTGCTG TCTAACACTG GTTGAAAAGA TTCACTCTGG TTACGAAGCT 780
CCTCGAATCC CTGTAGATAA AAGAATTTTT ACCACAACAC ACACTCCAGG ATGTGTGTTT 840
CTTGAAGTAG ATGAAAGAGC AGTGCCTTTG CTGGGTTACC TACCTCAGGA TCTGATTGGA 900
ACATCGATCT TAACATACTT GCACCCAGAA GATCGGCCTC TGATGGTTGC CATACACCAA 960
AAAGTTTTAA AGTATGCCGG CCACCCTCCG TTTGAACACT CGCCCGTCAG ATTCTGCACT 1020
CAGAACGGAG AGTATGTCAT TCTGGATTCC AGCTGGTCCA GCTTTGTCAA CCCCTGGAGC 1080
CGGAAGGTCT CCTTCATCAT TGGTCGACAT AAAGTCCGAA CGAGTCCATT AAATGAAGAT 1140
GTTTTTGCCA CCAGAATAAA AAAGGCAGCC AGTAACGACA AAGACATAGC AGAATTACAA 1200
GAACAAATTC ACAAACTTCT CTTGCAGCCG GTTCATGCTA GTGCTTCCAG TGGCTACGGG 1260
AGCCTGGGCA GCAGCGGCTC ACAGGAGCAG CACGTCAGCA TCACCTCTTC GAGTGAGTCC 1320
AGCGGGCACT GTCCGGAGGA AGGCCAGCAT GAGCAGATGA CCCTGCAGCA GGTCTATGCC 1380
AGTGTAAACA AAATTAAGAA TGTGGGCCAA CAGCTCTACA TCGAGTCCAT GGCCAGATCA 1440
TCAGTGAAGC CAGTGGCAGA GACGTGCGTG GAACCGCAGG GTGGTGATGA GCAGAAGGAC 1500
TTTTCTTCCT CTCAGACACT GAAAAATAAA AGCACCACGG ATACTGGCTC CGGTGGCAAT 1560
CTGCAGCAAG AGCAGCCCAG CTCGTCCTAT CAGCAGATGA ACTGTATCGA CAGTGTCATC 1620
AGGTACCTGA CAAGCTACAG CCTCCCGGCC TTGAAAAGAA AGTGCATCTC CTGCACAAAC 1680
ACATCTTCAT CCTCAGAAGA AGCCAAGCCA ATCCCGGAGG TGGACAGCAG CCAGAGAGAC 1740
ACGGAACAGC TCCTGGACAT ACGGAAACAG GAAACAACTG GACCATCCAC AGACATCGAA 1800
GGAGGTGCTG CTCGGACCCT GTCCACCGCC GCACTGAGCG TGGCGTCTGG CATCAGCCAG 1860
TGCAGCTGCA GCAGCACCTC TGGCCACGCT CCGCCCCTAC AGTCAGAAAG TGTTGCCGTG 1920
GCGTGTAAGC CGTGGGCCCT GAGAACGAAG GCCTCTCACC TGGCTGCAGG AGGATTTAAG 1980
CACGTGGGGC TCACAGCAGC TGTCCTCTCT GCACACACAC AGAAGGAAGA GCAGAACTAC 2040
GTTGACAGGT TCCGGGAAAA GATCCTGACC TCGCCCTACG GTTGCTATCT TCAGCAAGAG 2100
AGCAGAAACC GTGCTCAGTA CTCCTGTGTT CAAGCAGGGT CCACTGCTAA GCACAGCAGA 2160
TGTGCTGGAA GCGAGAGGCA GAAGCACAAA CGAAAGAAGT TGCCAGCACC TGTGGACACC 2220
AGCAGCCCCG GTGCCCACCT CTGTCCCCAT GTCACAGGAC TCCTCCCGGA TGAGCAGCAC 2280
TGGGGCCCAT CCGCTAGCCC CTCCCCCCTC GGCGCAGGCT TAGCATTCCC CTCGGCCCTG 2340
GTAGTTCCCA GCCAGACCCC TTATCTCCTC CCCTCTTTTC CCCTCCAAGA TATGGCCTCT 2400
CAGGGAGTGG GGGTCTCGGC AGCCTGGGGA GCTGCAGCCG GATGTCCACC TCTGTCCGCC 2460
GGCCCCCAGG CTGTTGCCGC GTTCCCCTCC GCTTACGTGG ATACTTTGAT GACCATCTTC 2520
CTGCACAACG CCCCTCTCTT CCCTCTGTGG CCGCCCTCGT TCTCCCCATA CCCATCCCTG 2580
GGGGCCGCAG GGTCTTCTGA ACTGGCACCC TTAGTACCAG CAATGGCTCC AAACCCGGAA 2640
CCAACCACTT CAGGCCACAG CCAAAGGAGA GTGGAGGAGA ACTGGGAGGC ACACAGTGAA 2700
GAGCTTCCGT TCATTAGCTC ACGGAGCAGT TCACCGTTAC AGTTAAATTT ACTCCAGGAA 2760
GAAATGCCTG CGCCGTCAGA GTCCGCAGAC GCAGTGAGAA GAGGCGCTGG GCCAGACGCT 2820
AAGCATCACT GTGTTACAGG TCCCAGTGGC AGTAGGAGCC GTCACTGCAC CTCTGGTGAG 2880
CTGGCCACGG CAACAGCGCA CCAGGAGTCT GCTGCTGCCT CAGGAAGCAG TGCCAGCAGT 2940
ATATACTTCA GTAGCACTGA CTATGCTTCT GAAGTCTCTG AAAACAGACA GAGGCCACAG 3000
GATAGACAGA GAGACGAAGC CCTTCCCGGG GCGGCTGAAG AGTCCATCTG GAGAATGATA 3060
GAGCGGACAC CAGAGTGTGT ACTCATGACA TACCAGGTGC CCGAGAGGGG TCGAGAGGAG 3120
GTGCTGAAGC AGGACCTGGA GAAGCTCCAG AGCATGGAAC AGCAGCAGCC CCTGTTCTCT 3180
CCCGCGCAGA GGGAGGAGCT GGCCAAGGTG CGCTCCTGGA TCCACAGCCA CACAGCCCCT 3240
CAGGAGGGAC ACCTCCAGAG CTGTGTCGCC TGTGAAGACA GAGGTTCAGT GGGTGACACT 3300
GCAGAGGTCC TGGAACAGCG CCCAGCAGAA GACACCAGTT GA 3342
Sequence Source Uniprot/ENA
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-AiM-028497Ailuropoda melanoleuca64.35 2.00e-150 529.6
CGD-AnP-057114Anas platyrhynchos46.45 0.00e+00 656.8
CGD-CaJ-041907Callithrix jacchus51.6 0.00e+00 1029.2
CGD-CaF-038549Canis familiaris55.68 0.00e+00 1147.9
CGD-CaP-050028Cavia porcellus48.48 0.00e+00 886.7
CGD-ChS-042175Chlorocebus sabaeus56.54 0.00e+00 1157.9
CGD-ChH-060322Choloepus hoffmanni47.9 8.00e-159 559.3
CGD-DaR-072762Danio rerio38.98 0.00e+00 696.8
CGD-DaN-060659Dasypus novemcinctus63.83 0.00e+00 811.2
CGD-DiO-049550Dipodomys ordii58.73 0.00e+00 886.3
CGD-EqC-051045Equus caballus60.52 0.00e+00 1238
CGD-FeC-041831Felis catus46.34 0.00e+00 815.1
CGD-FiA-032827Ficedula albicollis42.34 0.00e+00 755
CGD-GaG-020965Gallus gallus48.13 0.00e+00 684.1
CGD-GoG-059542Gorilla gorilla52.26 0.00e+00 1024.2
CGD-HoS-062136Homo sapiens (Human)53.88 0.00e+00 1077
CGD-IcT-051943Ictidomys tridecemlineatus63.23 0.00e+00 1099.7
CGD-LaC-038253Latimeria chalumnae45.85 1.00e-178 625.5
CGD-LeO-053510Lepisosteus oculatus38.69 5.00e-140 496.9
CGD-LoA-064706Loxodonta africana52.66 0.00e+00 965.3
CGD-MaE-031352Macropus eugenii60.16 2.00e-162 571.2
CGD-MeG-072597Meleagris gallopavo53 0.00e+00 665.6
CGD-MiM-058960Microcebus murinus54.6 0.00e+00 916.4
CGD-MoD-067747Monodelphis domestica48.43 0.00e+00 941.8
CGD-MuP-062621Mustela putorius furo48.91 0.00e+00 943
CGD-MyL-055612Myotis lucifugus55.05 0.00e+00 897.1
CGD-NoL-069268Nomascus leucogenys56.38 0.00e+00 1140.2
CGD-OrN-041249Oreochromis niloticus45.72 1.00e-156 552
CGD-OrL-069692Oryzias latipes45.15 7.00e-163 572.8
CGD-OtG-043281Otolemur garnettii60.11 0.00e+00 1263.8
CGD-OvA-022195Ovis aries51.1 0.00e+00 1014.2
CGD-PaT-063745Pan troglodytes57.45 0.00e+00 1186
CGD-PaA-041667Papio anubis57.39 0.00e+00 1177.2
CGD-PoA-060690Pongo abelii56.5 0.00e+00 1134.8
CGD-PrC-048229Procavia capensis47.1 0.00e+00 738
CGD-PtV-052486Pteropus vampyrus64.8 0.00e+00 889.4
CGD-RaN-021797Rattus norvegicus81.84 0.00e+00 1827.8
CGD-SaH-047243Sarcophilus harrisii51.12 0.00e+00 936.8
CGD-SuS-028663Sus scrofa50.13 0.00e+00 967.2
CGD-TaG-047964Taeniopygia guttata48.74 0.00e+00 694.5
CGD-TaS-050246Tarsius syrichta64.69 0.00e+00 862.1
CGD-TeN-064311Tetraodon nigroviridis42.53 4.00e-163 573.5
CGD-TuB-071016Tupaia belangeri55.46 0.00e+00 963.8
CGD-TuT-040951Tursiops truncatus55.24 0.00e+00 1087.8
CGD-XeT-062261Xenopus tropicalis43.15 0.00e+00 755
Keyword

KW-0002--3D-structure
KW-0090--Biological rhythms
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0832--Ubl conjugation

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0019900--F:kinase binding
GO:0031625--F:ubiquitin protein ligase binding
GO:0032922--P:circadian regulation of gene expression
GO:0007623--P:circadian rhythm
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045187--P:regulation of circadian sleep/wake cycle, sleep
GO:0006351--P:transcription, DNA-templated

Interpro

IPR000014--PAS
IPR013655--PAS_fold_3
IPR015524--Per_circ_prot_3
IPR022728--Period_circadian-like_C

PROSITE

PS50112--PAS

Pfam

PF08447--PAS_3
PF12114--Period_C

SMART

SM00091--PAS