CGDB Gene Information

Tag Content
CGDB ID CGD-LoA-064706
Ensembl Accession ENSLAFP00000000486.3
Protein Name PER3
Ensembl Information ENSLAFG00000000581; ENSLAFT00000000580
Organism Loxodonta africana
NCBI Taxa ID 9785
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 15 ZT 9 LD 6 duodenum Predicted from orthologs E1C8E2
ZT 0 ZT 12 LD 5 pineal gland Predicted from orthologs E1C8E2
ZT 8 ZT 0 LD 4.6 brown adipose tissue Predicted from orthologs O70361
ZT 8 ZT 0 LD 2.46 epididymal white adipose tissue Predicted from orthologs O70361
ZT 12 ZT 0 LD 10 femur vertebra Predicted from orthologs O70361
ZT 8 ZT 4 LD 5.2 heart Predicted from orthologs O70361
ZT 12 ZT 0 LD 35 jejunum Predicted from orthologs O70361
CT 9 CT 21 DD1 2 SCN Predicted from orthologs O70361
ZT 8 ZT 16 LD 2.5 SCN Predicted from orthologs O70361
CT 15 CT 3 DD1 2 testis Predicted from orthologs O70361
CT 15 CT 3 DD1 4 liver Predicted from orthologs O70361
ZT 8 ZT 0 LD 14 lumbar vertebra Predicted from orthologs O70361
CT 0 CT 12 DD2 8.8 NIH-3T3 cells Predicted from orthologs O70361
ZT 8 ZT 0 LD 23 liver Predicted from orthologs O70361
ZT 6 ZT 18 LD 4 muscle Predicted from orthologs W5PL09
ZT 12 ZT 0 LD 25 abdominal adipose tissue Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 2.3 basolateral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 12 ZT 0 LD 5 entral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 4.5 hippocampus Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 14 nucleus accumbens core Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 5 nucleus accumbens shell Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 8 prefrontal cortex Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 6 SCN Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 2 ventral tegmental area Predicted from orthologs Q8CJE2
Descriptionperiod circadian clock 3 [Source:HGNC Symbol;Acc:HGNC:8847](View all)
Protein Sequence
(Fasta)		 ANSEFFQILS QNGAPPTDVT MYSLEKLSTI ASEHTSKNTD TFMAVVSFLS GRLVHISEQA 60
TSILNYEKDF LESFHFVELL APQDVRVFYA HTAHAQLPFW NNWTQRAASQ YEFAPVKSFF 120
CRIRGGEGGE QEKNYRPFRV ISYLIHVRSP TQPGAEPCCL MLVEKIHSGY EAPRIPVDKR 180
IFTTMHTPGC VFLEVDERAV PLLGYLPQDL IGTSILMYLH PEDRSLMVAI HQKVLKYAGQ 240
PPFEHLPIRF CTQNGDYIIL DSSWSSFVNP WSRKVSFIIG RHKVRTSPLN EDVFATRVKK 300
VNSNDKDITE LQEQIHKLLL QPVHVGDSSG YGSLESSGSQ EHYVSIESSS ESSGHCVEEI 360
QKEPMTLQQV CASVNKIKNR GQQLYIESMT KSPNKPAADG TADGKTQLLE CISDNKKCEV 420
KHTSKNHSTH TASSKDLRKD GHSPSYQQIN SIDSVLRYLK SCSFPDLKRK CVSCTNTNSS 480
SSEDGRQILS QIPVIAKSEM TTAGQSTDAE EGVLQTPSAK ALSLVSGMSQ CSYSSTIVHV 540
PPPEPVPGSD MHMHEQLSGL ARGRMYSGGP GCTEAASLTS EGFKHVGLTK AVLSAHTQKE 600
EQNYVDKFRE KILSSPYSSY LQQESTSKAK CSHVQGDSTS RQTKSARWKK GKHKRKKLPV 660
PSDSNRCADI CPHFREGVQD AQPWWPPRDF LPHSPGLSFP STVVMPSQAP YLTPPPPGSL 720
MSVPAFPAPY LDTFMTVFLH APPACPLLPP SFSPYPLLGA AGSPEIPPSS SPEAPGLEPP 780
SSVTNQRRVA ERWETHGEEH PFISSRSSSP LQLDLLQEEM PGSSQSPDQM KRDVCSEAEV 840
QEVCNSGNNN NCCPASELST VLLRQNSPSG THSAASGNGF GTGVGVKYFS SLFASSIGRL 900
SGSSDSSIYF ASSDYSSEIS QNGHITQDAQ KKETAPNSVQ ESIWRMIEQT PERILMTYQV 960
PERVKEVVLK EDLEKLESMR QGQPQFSREQ REELAKVHSW IQSQTVPQEI DMQGCVTC 1018
Nucleotide Sequence
(Fasta)		 GCAAACAGTG AGTTTTTCCA GATTCTCAGT CAAAATGGAG CACCTCCAAC AGATGTGACC 60
ATGTACAGTC TTGAGAAGCT GTCCACTATC GCCTCAGAAC ACACTTCCAA AAACACAGAC 120
ACCTTTATGG CAGTTGTTTC ATTTCTGTCT GGAAGGTTAG TGCACATTTC TGAACAGGCT 180
ACTTCAATCC TGAATTATGA AAAAGATTTC TTGGAGTCTT TCCATTTTGT TGAACTACTT 240
GCCCCTCAGG ATGTGAGGGT GTTCTACGCA CACACCGCCC ACGCCCAGCT TCCCTTCTGG 300
AACAACTGGA CCCAAAGAGC AGCCTCACAG TACGAATTTG CTCCTGTGAA ATCCTTTTTC 360
TGCAGGATTC GTGGTGGTGA AGGTGGAGAG CAAGAGAAGA ACTACCGCCC ATTCCGGGTT 420
ATCTCCTATT TGATTCACGT GCGTAGCCCC ACCCAGCCAG GAGCTGAGCC TTGCTGTCTC 480
ATGCTGGTTG AAAAGATTCA CTCTGGTTAT GAAGCTCCTC GAATCCCAGT GGATAAAAGA 540
ATTTTTACCA CAATGCATAC CCCAGGGTGT GTTTTTCTTG AAGTAGATGA AAGAGCAGTG 600
CCTTTGCTGG GTTACCTACC TCAGGATCTG ATTGGAACAT CGATCTTAAT GTATTTGCAC 660
CCAGAAGATC GTTCCCTAAT GGTTGCCATA CACCAAAAAG TCTTGAAGTA CGCAGGCCAG 720
CCCCCCTTTG AACATTTACC CATTAGATTT TGTACTCAAA ATGGAGATTA CATCATACTG 780
GATTCCAGTT GGTCTAGCTT TGTGAACCCT TGGAGCCGGA AGGTTTCTTT CATCATCGGT 840
CGGCATAAAG TTCGAACGAG TCCGCTAAAT GAGGATGTTT TTGCTACCAG AGTGAAAAAG 900
GTGAACAGTA ATGACAAGGA TATCACAGAA TTGCAGGAAC AAATTCACAA ACTTCTCTTG 960
CAGCCGGTTC ACGTGGGTGA TTCCAGTGGC TATGGAAGCC TCGAAAGCAG TGGCTCCCAG 1020
GAACATTATG TCAGCATCGA ATCTTCTAGT GAGTCCAGTG GGCACTGTGT GGAGGAAATA 1080
CAAAAGGAGC CAATGACTTT ACAGCAGGTC TGTGCCAGTG TAAACAAGAT TAAGAATCGG 1140
GGTCAGCAGC TCTACATTGA GTCAATGACG AAATCGCCAA ACAAGCCAGC AGCGGATGGT 1200
ACAGCAGATG GTAAGACTCA GTTGTTAGAA TGCATTTCAG ATAATAAAAA ATGTGAGGTT 1260
AAACATACAT CGAAAAACCA CAGCACACAC ACTGCGTCTT CTAAGGATTT GAGAAAAGAT 1320
GGGCACAGCC CATCCTACCA GCAAATCAAC TCTATCGATA GTGTTCTCAG ATATCTGAAG 1380
AGCTGCAGCT TTCCAGATTT GAAAAGAAAG TGTGTATCCT GTACGAATAC AAATTCGTCG 1440
TCGTCAGAAG ACGGCAGACA AATCCTTTCT CAGATCCCAG TCATAGCTAA ATCAGAAATG 1500
ACGACAGCTG GCCAGTCCAC AGATGCTGAG GAAGGGGTTC TACAGACCCC GTCTGCAAAG 1560
GCCCTGAGCC TGGTGTCCGG CATGAGCCAG TGCAGTTACA GCAGCACCAT CGTTCACGTC 1620
CCACCACCTG AGCCAGTTCC TGGGAGTGAC ATGCATATGC ATGAACAGCT GTCAGGGTTG 1680
GCCAGGGGAA GGATGTATTC AGGAGGCCCT GGCTGTACAG AGGCAGCTTC ACTGACCTCA 1740
GAAGGATTTA AACACGTGGG GCTCACAAAG GCTGTCTTAT CAGCCCACAC GCAAAAGGAA 1800
GAACAGAATT ATGTCGATAA ATTCCGTGAA AAGATCCTGT CCTCACCCTA CAGCTCTTAC 1860
CTTCAGCAAG AAAGCACAAG CAAAGCAAAA TGCTCACATG TTCAAGGAGA TTCTACTTCC 1920
AGGCAGACCA AATCAGCTAG GTGGAAGAAA GGGAAACACA AACGGAAGAA GCTGCCTGTG 1980
CCCTCAGACA GCAACCGCTG TGCTGACATC TGTCCTCACT TCAGAGAAGG GGTGCAGGAC 2040
GCACAGCCCT GGTGGCCTCC TAGGGACTTC CTGCCACACA GCCCTGGCCT GTCGTTCCCG 2100
TCCACAGTGG TGATGCCCAG CCAGGCCCCT TACCTCACGC CTCCTCCACC CGGCAGCCTG 2160
ATGTCTGTCC CAGCCTTCCC TGCTCCTTAC TTGGACACGT TCATGACTGT TTTTCTGCAT 2220
GCGCCCCCTG CCTGTCCCCT GTTACCGCCG TCATTCTCTC CTTACCCGCT CCTGGGAGCA 2280
GCAGGCTCTC CTGAAATACC ACCCTCCTCG TCACCGGAGG CCCCAGGCCT GGAACCACCA 2340
TCTTCAGTCA CCAACCAAAG GAGGGTGGCG GAAAGATGGG AGACACATGG TGAAGAACAT 2400
CCTTTTATTT CTTCCCGGAG CAGCTCACCA CTGCAGTTGG ACTTACTTCA GGAGGAAATG 2460
CCTGGGTCTT CTCAATCTCC AGATCAGATG AAAAGGGATG TTTGCTCAGA AGCTGAGGTC 2520
CAAGAGGTAT GCAACAGTGG GAATAACAAC AACTGTTGCC CAGCCAGTGA ACTGTCCACT 2580
GTGTTACTTC GCCAGAATTC TCCCTCTGGA ACCCATTCTG CAGCATCAGG TAATGGGTTT 2640
GGCACTGGTG TGGGAGTAAA GTATTTTTCT TCTCTTTTCG CAAGCTCTAT TGGGAGGCTT 2700
AGTGGAAGCA GTGACAGCAG TATATACTTT GCTAGTAGTG ATTACTCTTC TGAAATCTCC 2760
CAAAATGGGC ACATAACCCA GGATGCACAG AAAAAAGAGA CAGCTCCCAA TTCCGTCCAG 2820
GAGTCCATCT GGAGAATGAT AGAACAGACA CCTGAGCGCA TTCTAATGAC GTATCAGGTG 2880
CCCGAGAGGG TTAAAGAAGT TGTACTAAAA GAAGACCTAG AAAAGCTGGA GAGCATGAGG 2940
CAGGGACAGC CCCAGTTTTC CCGAGAACAG AGGGAGGAGC TGGCCAAGGT GCATTCTTGG 3000
ATTCAGAGCC AGACCGTCCC TCAAGAAATA GACATGCAAG GCTGTGTCAC CTGC 3054
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-GaG-020965Gallus gallus45.7 0.00e+00 789.6
CGD-MuM-021078Mus musculus (Mouse)52.66 0.00e+00 965.3
CGD-OvA-022195Ovis aries52.98 0.00e+00 974.9
CGD-RaN-021797Rattus norvegicus52.03 0.00e+00 964.5
Gene Ontology

GO:0032922--circadian regulation of gene expression
GO:0005515--protein binding
GO:0045187--regulation of circadian sleep/wake cycle, sleep
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0031625--ubiquitin protein ligase binding
GO:0019900--kinase binding
GO:0007623--circadian rhythm