CGDB Gene Information

Tag Content
CGDB ID CGD-AnP-057114
Ensembl Accession ENSAPLP00000011018.1
Protein Name PER3
Ensembl Information ENSAPLG00000011254; ENSAPLT00000011738
Organism Anas platyrhynchos
NCBI Taxa ID 8839
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 15 ZT 9 LD 6 duodenum Predicted from orthologs E1C8E2
ZT 0 ZT 12 LD 5 pineal gland Predicted from orthologs E1C8E2
ZT 15 ZT 3 LD 2 blood Predicted from orthologs P56645
CT 16 CT 4 DD2 2.7 human HaCaT keratinocytes Predicted from orthologs P56645
ZT 4 ZT 21 LD 3.5 human HaCaT keratinocytes Predicted from orthologs P56645
ZT 8 ZT 0 LD 4.6 brown adipose tissue Predicted from orthologs O70361
ZT 8 ZT 0 LD 2.46 epididymal white adipose tissue Predicted from orthologs O70361
ZT 12 ZT 0 LD 10 femur vertebra Predicted from orthologs O70361
ZT 8 ZT 4 LD 5.2 heart Predicted from orthologs O70361
ZT 12 ZT 0 LD 35 jejunum Predicted from orthologs O70361
CT 9 CT 21 DD1 2 SCN Predicted from orthologs O70361
ZT 8 ZT 16 LD 2.5 SCN Predicted from orthologs O70361
CT 15 CT 3 DD1 2 testis Predicted from orthologs O70361
CT 15 CT 3 DD1 4 liver Predicted from orthologs O70361
ZT 8 ZT 0 LD 14 lumbar vertebra Predicted from orthologs O70361
CT 0 CT 12 DD2 8.8 NIH-3T3 cells Predicted from orthologs O70361
ZT 8 ZT 0 LD 23 liver Predicted from orthologs O70361
ZT 6 ZT 18 LD 4 muscle Predicted from orthologs W5PL09
ZT 12 ZT 0 LD 25 abdominal adipose tissue Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 2.3 basolateral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 12 ZT 0 LD 5 entral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 4.5 hippocampus Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 14 nucleus accumbens core Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 5 nucleus accumbens shell Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 8 prefrontal cortex Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 6 SCN Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 2 ventral tegmental area Predicted from orthologs Q8CJE2
Descriptionperiod circadian clock 3 [Source:HGNC Symbol;Acc:HGNC:8847](View all)
Protein Sequence
(Fasta)		 YSDQLDWSQS HEDLMTMIQE MKKCLPEDKR SSSKPSTISA LNYALQCVQQ VQANKEFFQA 60
LNDRRVFQTD VTTYSIEELV TVASEHTPKN SDTFVAVFSL LSGRIVHISK QAASILNCKK 120
KVLDSSRFVE LLAPEDVSVF YTHTDQSHLP LWNVENQTDS LFEYAQVKSF FCRLRGGKDQ 180
EQEKHCYPFR ITPYLVHVCT SVHIDAESCC LALAEKIHSG YEAPRIPMEK RIFTTTHTPG 240
CVFLEIDDRA VPLLGYLPQD LIGTSMLMYL HPEDRPLMIA VHRKILKFAG QSPFEHLPIR 300
FCTQNGDYVI LDTSWSSFVN PWSRKVVFII GRHKVRTSPL NEDVFAARNK EASSVEKEIR 360
ELQGQIYKLL LQPVHSSISS GYDSLGSSGS YEHYISISSS SDSNGNCADE TQEPITLQQV 420
CADVNRIKNL GQQLYIASWS KPQNGNEQAM SSEMLGGELI ISSFLGRRHS ASCFLQRVRS 480
DSTEEPGNIL YDDSKRTPLV PSYQQINCVD SIIRYLESCS IPVLKRKCKS STNTSSSSSD 540
DDKKTQQTQQ EFKALEVNSQ TPVSADWEEM LKKQTTAGVV GAPLADLTLS KSPSVVSATS 600
QCSYSSTIVH VPHPQSEVTT MEDAAVGNEQ MELPPVNELI MVPEELKPVG LTKETLSAHT 660
QKEEQNYVDK FHQRILLSPF RTYLQQGSRS NNGHSCGQGD SPSLERSTAS CKKGKHGKFK 720
CPKPQRQPLD SHSHSKNRNT CSLPREKRTI QKQSFFPSEV SCQSSSTMNV FPPVGFPVYS 780
DPRSSFPASL VGEELALHSL KPEPTSLSQL SCEAPSFPAL YPPNLGTFMA VFFHSYPMYS 840
QLPQYAFLPS PQYIYPPSSY PCATLRLAPP PAPSAVAPNS VNQPFPASSA TSTEEQQEGR 900
HHWALQLSSS RGSSPLQLDL LQEELPKPVE
Nucleotide Sequence
(Fasta)		 TACAGTGATC AGCTGGATTG GAGCCAGTCT CATGAAGACC TGATGACGAT GATCCAGGAA 60
ATGAAAAAGT GTTTGCCTGA AGATAAAAGG AGTTCCAGCA AGCCCAGTAC CATCAGTGCT 120
CTCAATTATG CTTTGCAGTG TGTCCAACAA GTCCAAGCAA ACAAAGAGTT TTTCCAGGCC 180
TTGAATGATC GAAGAGTGTT TCAGACGGAT GTGACGACAT ACAGCATAGA AGAGTTGGTG 240
ACAGTTGCAT CAGAACACAC TCCAAAAAAC AGTGATACCT TTGTGGCTGT GTTTTCCCTG 300
CTTTCTGGGC GCATAGTGCA TATTTCCAAG CAGGCAGCAT CTATTCTAAA CTGTAAGAAG 360
AAAGTGTTGG ACTCTTCCCG GTTTGTGGAG CTGCTTGCCC CTGAGGATGT GAGTGTGTTC 420
TACACACATA CTGATCAGTC CCACCTGCCA CTTTGGAATG TGGAAAATCA AACGGACTCT 480
CTGTTTGAAT ATGCCCAGGT GAAATCCTTT TTCTGCAGGC TCAGGGGTGG TAAAGATCAA 540
GAACAAGAAA AGCATTGTTA CCCATTCCGA ATCACCCCGT ACTTGGTCCA CGTGTGTACT 600
TCTGTCCACA TAGATGCAGA ATCCTGCTGC TTAGCTTTGG CTGAGAAAAT TCACTCTGGA 660
TATGAAGCTC CTCGAATTCC TATGGAGAAA AGAATCTTCA CCACCACTCA CACTCCAGGA 720
TGTGTTTTTC TTGAGATAGA TGATAGAGCA GTGCCTTTGT TGGGTTACTT ACCTCAAGAT 780
TTAATTGGAA CATCCATGCT GATGTATTTG CATCCAGAAG ATCGTCCTTT GATGATCGCT 840
GTTCACCGTA AAATCTTGAA GTTTGCTGGC CAGTCCCCTT TCGAACACTT ACCCATTAGA 900
TTTTGTACTC AAAATGGGGA TTATGTCATA CTGGATACCA GCTGGTCCAG TTTTGTGAAT 960
CCATGGAGCA GAAAAGTGGT GTTCATCATT GGCCGACACA AAGTCCGAAC AAGCCCTCTG 1020
AATGAAGATG TCTTTGCTGC AAGAAATAAA GAAGCAAGCA GTGTTGAGAA AGAGATAAGA 1080
GAATTGCAAG GACAGATTTA CAAGCTGCTT CTGCAGCCAG TTCATAGCAG CATTTCCAGT 1140
GGTTATGATA GCCTTGGTAG CAGTGGCTCT TATGAACACT ATATCAGCAT ATCGTCTTCG 1200
AGTGACTCCA ATGGGAACTG TGCAGACGAA ACACAAGAAC CAATAACTTT GCAACAAGTA 1260
TGTGCAGATG TCAACCGAAT AAAAAATCTT GGGCAGCAGC TGTATATTGC ATCATGGAGC 1320
AAGCCACAGA ATGGAAATGA ACAGGCTATG AGTTCAGAAA TGCTAGGAGG TGAGTTAATA 1380
ATTTCTTCTT TTCTAGGGAG GAGACACAGT GCTTCCTGTT TTCTCCAGAG AGTGAGAAGT 1440
GATAGCACAG AAGAACCAGG CAATATACTT TATGATGATT CAAAGAGGAC TCCACTTGTT 1500
CCTTCCTATC AGCAGATTAA TTGTGTTGAT AGTATCATCA GATATCTAGA GAGCTGCAGT 1560
ATTCCAGTAT TGAAAAGGAA ATGTAAATCT TCTACAAATA CATCATCATC ATCTTCAGAT 1620
GACGACAAGA AAACCCAGCA AACTCAGCAG GAATTCAAGG CATTGGAAGT TAATTCCCAA 1680
ACTCCAGTAT CCGCTGATTG GGAAGAGATG CTGAAAAAGC AGACAACTGC AGGTGTTGTG 1740
GGAGCTCCTC TGGCAGACCT GACCCTGTCC AAGTCTCCAA GTGTGGTATC TGCCACTAGC 1800
CAGTGCAGTT ACAGCAGCAC TATAGTGCAC GTCCCACACC CTCAATCAGA AGTGACTACA 1860
ATGGAGGATG CTGCTGTTGG AAATGAACAA ATGGAACTGC CTCCTGTGAA TGAGCTCATT 1920
ATGGTGCCTG AGGAGTTAAA GCCTGTTGGG CTAACAAAAG AGACCTTGTC AGCCCACACT 1980
CAAAAGGAGG AGCAGAACTA CGTGGACAAG TTCCACCAGA GGATCTTGCT TTCTCCATTT 2040
AGGACTTACC TTCAACAGGG TAGCAGAAGT AACAATGGAC ATTCCTGTGG TCAAGGAGAT 2100
TCCCCTTCAT TGGAGAGGAG TACAGCTAGC TGCAAAAAAG GCAAACATGG AAAATTCAAG 2160
TGCCCGAAAC CTCAGAGACA GCCCTTAGAT AGCCACTCTC ATAGTAAAAA TAGAAATACA 2220
TGTAGTCTTC CACGTGAGAA GAGAACAATT CAGAAACAGT CATTTTTTCC CTCAGAAGTA 2280
TCCTGTCAGA GCTCCTCCAC TATGAATGTA TTTCCTCCTG TGGGATTTCC TGTCTATTCA 2340
GATCCACGAT CTAGTTTTCC AGCCTCTCTT GTAGGAGAGG AGCTTGCCCT TCACTCATTA 2400
AAACCTGAGC CAACGTCATT GTCACAGCTA AGCTGTGAAG CACCATCGTT CCCAGCACTT 2460
TATCCCCCAA ACTTAGGCAC GTTTATGGCT GTATTTTTTC ATAGTTACCC CATGTATTCT 2520
CAGCTGCCTC AATATGCCTT TCTTCCTAGC CCTCAGTACA TTTATCCCCC TTCTTCATAT 2580
CCATGCGCAA CACTACGTCT AGCTCCCCCT CCTGCTCCAT CAGCAGTAGC CCCAAACTCT 2640
GTGAATCAGC CCTTTCCAGC CTCTTCTGCC ACATCGACTG AGGAACAGCA AGAGGGCCGG 2700
CATCACTGGG CCCTACAGCT GAGTAGCTCA CGAGGCAGCT CCCCACTTCA ACTGGATTTG 2760
CTTCAAGAAG AGCTGCCAAA ACCTGTGGAG
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-GaG-020965Gallus gallus72.33 0.00e+00 1239.2
CGD-HoS-021431Homo sapiens (Human)48.88 0.00e+00 703.4
CGD-MuM-021078Mus musculus (Mouse)46.45 0.00e+00 656.8
CGD-OvA-022195Ovis aries47.27 0.00e+00 660.6
CGD-RaN-021797Rattus norvegicus45.57 0.00e+00 660.6
Gene Ontology

GO:0032922--circadian regulation of gene expression
GO:0005515--protein binding
GO:0045187--regulation of circadian sleep/wake cycle, sleep
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0031625--ubiquitin protein ligase binding
GO:0019900--kinase binding
GO:0007623--circadian rhythm