CGDB Gene Information

Tag Content
CGDB ID CGD-LeO-053510
Ensembl Accession ENSLOCP00000003090.1
Protein Name per3
Ensembl Information ENSLOCG00000002607; ENSLOCT00000003096
Organism Lepisosteus oculatus
NCBI Taxa ID 7918
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 15 ZT 9 LD 6 duodenum Predicted from orthologs E1C8E2
ZT 0 ZT 12 LD 5 pineal gland Predicted from orthologs E1C8E2
ZT 8 ZT 0 LD 4.6 brown adipose tissue Predicted from orthologs O70361
ZT 8 ZT 0 LD 2.46 epididymal white adipose tissue Predicted from orthologs O70361
ZT 12 ZT 0 LD 10 femur vertebra Predicted from orthologs O70361
ZT 8 ZT 4 LD 5.2 heart Predicted from orthologs O70361
ZT 12 ZT 0 LD 35 jejunum Predicted from orthologs O70361
CT 9 CT 21 DD1 2 SCN Predicted from orthologs O70361
ZT 8 ZT 16 LD 2.5 SCN Predicted from orthologs O70361
CT 15 CT 3 DD1 2 testis Predicted from orthologs O70361
CT 15 CT 3 DD1 4 liver Predicted from orthologs O70361
ZT 8 ZT 0 LD 14 lumbar vertebra Predicted from orthologs O70361
CT 0 CT 12 DD2 8.8 NIH-3T3 cells Predicted from orthologs O70361
ZT 8 ZT 0 LD 23 liver Predicted from orthologs O70361
ZT 6 ZT 18 LD 4 muscle Predicted from orthologs W5PL09
ZT 12 ZT 0 LD 25 abdominal adipose tissue Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 2.3 basolateral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 12 ZT 0 LD 5 entral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 4.5 hippocampus Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 14 nucleus accumbens core Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 5 nucleus accumbens shell Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 8 prefrontal cortex Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 6 SCN Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 2 ventral tegmental area Predicted from orthologs Q8CJE2
Descriptionperiod circadian clock 3 [Source:ZFIN;Acc:ZDB-GENE-000804-1](View all)
Protein Sequence
(Fasta)		 RGRDQAHREM MQTVQEMKKR LPSERRGHRK ASTVEALNYA LNCVKQVQAN SEYYKLLMSN 60
GVVLRHDATA CNLEELESIT SEHTLKNTDT FVAVFSLASG RIVYISEQAS SILNCKRKFL 120
DSAKFVELLY HQDINIFYSH TAQPHLPPWN MGTDSAAILF ECARVRSFFC RIRSARERSF 180
CFSRHFFHSF EALSLETLQK MRPLLCNVYQ SDVMISSHDL PKHEVAMDVK VADCNCTRWI 240
FILQVSDSAV PLLGYLPQDL IGTSVLACLH PEDRPLMLAM HRKILKYAGQ SPFDHSPVRF 300
RCQNGDYVTL DTSWSSFINP WSRKVAFVIG RHKVRTGPLN EDVFAPRCKG QLPVIDEEIK 360
ELQAQIYKLF LQPVHNNGSS GYGSLGSNGS HEHYISVASS SDSNGNVWED AQREPVRGVE 420
GCYVILRPKK WGLSLDLSRT QQTMRSCRYG LSAGLPLLSG KQEVRGHLTA SQGSSRKQPH 480
VPSYQQINCV DSIIRYLESY SGPALKRKCE SLSNTTSSSS EEDRTPPPLL EGTQQVEEES 540
LLATGAPDSQ VSAGSGVTTT AAVVGAPLTD LTLSTKAMSV VSVTSQCSYS STIVHVPQPE 600
SEVTALEDAP MGSEQADPPR VALCSAAAPE EFRKVGLTKE VLSAHTQKEE QDYVDRFQHR 660
ILQSPYSSYL QQDSSSKAPS HHHGDYVPRP ASTTGWRKSK TGKPKHKRPK PQGSSDSYAS 720
PPESCRARRP PAAPASPLYQ AWTPPEASQA RAPSMGFLPP VVMPFQPAYF PLPAQVGGEA 780
AGGMTPNSSS QQGGNPLAMQ GVQPMQPAQP VHSVQAMQTM QPPLPVQQMQ GMVPYVAPVM 840
AVFVPSFPNY PGYPMYPQEV GSVGPASSPS PQAVPCPSFT PAPFPETHPP QGPYIGPPEP 900
PLPSLSPQAP SSLGEDPDSA QPPPLFSSSR SSSPLQLNLL QEELPKPAEP QGGAALPESL 960
HEPHTKGDDA PSESGNQDNQ STSSELLDLL LHEDSRSGTG SNVSGSGSGE SGGSLGSGSN 1020
GSGSNGTSAS HTGSSQSGNS SKYFASNDSS DTSRSKARKS QEVPERASFE KRAEDSLWTM 1080
IQHTPEPIMM NYQLLPRDQA QVLTEDRKKL LLLQPLQPWF TEEQKEELAE VHPWICQHGL 1140
PPEIDTQGCI SCNRTADPPA EPQTA 1165
Nucleotide Sequence
(Fasta)		 CGGGGGCGGG ACCAGGCGCA CCGGGAGATG ATGCAGACGG TGCAGGAGAT GAAGAAGAGG 60
CTGCCCTCCG AGAGGCGGGG CCACCGCAAG GCCAGCACGG TGGAGGCCCT CAACTACGCC 120
CTCAACTGCG TCAAACAAGT GCAGGCTAAC AGTGAGTACT ACAAGCTGCT TATGAGTAAT 180
GGTGTGGTCT TACGGCACGA CGCCACTGCC TGCAACCTGG AGGAGCTGGA ATCCATCACC 240
TCTGAGCACA CCCTCAAAAA CACGGACACG TTTGTGGCGG TCTTCTCCCT GGCCAGCGGC 300
CGGATCGTCT ACATCTCGGA GCAGGCGTCC AGCATCCTCA ACTGCAAGAG GAAGTTCCTG 360
GATTCGGCCA AGTTCGTGGA GCTGCTGTAC CACCAGGACA TCAACATCTT CTACTCCCAC 420
ACCGCCCAGC CCCACCTGCC ACCCTGGAAC ATGGGCACCG ACAGCGCTGC GATCCTGTTC 480
GAGTGCGCCC GGGTCAGGTC CTTCTTCTGC AGAATCAGGT CAGCCCGAGA ACGGTCCTTC 540
TGTTTTAGTC GTCACTTTTT TCATTCATTT GAAGCTCTTA GCCTTGAAAC TTTACAGAAA 600
ATGAGACCGC TGCTCTGTAA TGTTTATCAG TCCGATGTAA TGATATCATC GCATGATCTT 660
CCAAAGCATG AAGTAGCTAT GGATGTTAAA GTGGCAGACT GCAACTGTAC GAGGTGGATA 720
TTTATACTGC AAGTGTCTGA TTCTGCTGTT CCCCTTCTTG GGTACCTTCC TCAGGACCTG 780
ATTGGCACCT CAGTCCTCGC CTGCCTGCAT CCTGAAGACC GCCCACTCAT GCTGGCCATG 840
CACCGCAAAA TCCTGAAGTA CGCCGGCCAG TCGCCCTTCG ACCACTCCCC GGTACGGTTC 900
CGCTGCCAGA ACGGCGACTA CGTCACCCTG GACACCAGCT GGTCCAGCTT CATCAACCCC 960
TGGAGCCGCA AGGTGGCCTT CGTCATCGGC AGACACAAAG TCCGCACCGG GCCTCTCAAC 1020
GAGGACGTGT TTGCGCCGAG GTGTAAAGGA CAGCTGCCCG TCATCGATGA GGAAATCAAG 1080
GAGCTCCAGG CACAAATCTA CAAGCTCTTC CTGCAGCCAG TGCACAACAA CGGCTCCAGT 1140
GGGTACGGCA GCCTGGGCAG TAATGGTTCC CACGAGCACT ACATCAGCGT CGCGTCCTCC 1200
AGCGACAGCA ACGGCAACGT GTGGGAGGAC GCGCAGCGCG AGCCGGTGAG AGGGGTAGAG 1260
GGCTGTTACG TCATATTGAG ACCCAAAAAG TGGGGACTGA GCTTGGATCT CTCTCGCACA 1320
CAGCAGACAA TGAGAAGTTG TCGATACGGA CTGAGTGCAG GTCTTCCACT TCTCTCCGGG 1380
AAGCAGGAGG TCAGAGGGCA TCTCACTGCC TCCCAAGGCA GCTCCAGGAA GCAGCCCCAC 1440
GTTCCGTCCT ACCAGCAGAT CAACTGTGTG GACAGCATCA TCAGGTATCT GGAGAGCTAC 1500
AGCGGCCCGG CTCTGAAGCG CAAGTGCGAG TCTCTGTCCA ACACCACCTC CTCGTCCTCT 1560
GAAGAAGACA GGACCCCCCC ACCCTTGCTG GAGGGAACGC AGCAGGTTGA GGAAGAGTCC 1620
CTGCTGGCTA CTGGAGCCCC AGACAGCCAG GTGTCAGCCG GGTCTGGAGT GACGACCACA 1680
GCGGCAGTGG TGGGGGCCCC CCTGACTGAC CTCACCCTCT CCACCAAGGC CATGAGCGTG 1740
GTGTCCGTCA CCAGCCAGTG CAGCTACAGC AGCACCATCG TTCACGTTCC CCAGCCCGAG 1800
TCTGAGGTGA CCGCGCTGGA GGATGCCCCG ATGGGCAGCG AGCAGGCGGA CCCCCCCCGT 1860
GTCGCCCTCT GCTCGGCAGC AGCCCCGGAG GAGTTCCGCA AGGTGGGGCT CACCAAGGAA 1920
GTGCTGTCGG CGCACACCCA GAAAGAGGAG CAGGACTACG TGGACCGCTT CCAGCATCGC 1980
ATCCTGCAGA GCCCCTACAG CTCCTACCTG CAGCAGGACA GCAGCAGCAA GGCGCCCTCC 2040
CACCACCACG GTGACTATGT CCCAAGGCCT GCTAGCACAA CAGGGTGGAG GAAATCCAAG 2100
ACCGGCAAGC CGAAGCACAA GCGGCCCAAG CCGCAGGGCT CCTCCGACAG CTATGCCTCT 2160
CCTCCCGAGA GCTGCCGTGC CCGTAGGCCC CCAGCTGCCC CTGCCTCTCC CCTGTACCAG 2220
GCCTGGACCC CTCCTGAGGC CTCGCAGGCC AGGGCCCCCA GTATGGGCTT CCTCCCACCC 2280
GTGGTCATGC CCTTCCAGCC AGCCTACTTT CCCTTGCCGG CACAGGTGGG TGGTGAGGCA 2340
GCAGGGGGCA TGACTCCGAA CTCCAGCAGC CAGCAGGGTG GGAATCCTCT TGCTATGCAA 2400
GGCGTGCAAC CCATGCAGCC AGCGCAGCCA GTCCATTCAG TGCAGGCAAT GCAAACCATG 2460
CAGCCTCCAC TGCCAGTGCA GCAGATGCAA GGCATGGTGC CTTATGTGGC TCCAGTTATG 2520
GCCGTCTTTG TTCCCAGCTT CCCCAACTAT CCCGGCTACC CCATGTACCC CCAGGAGGTG 2580
GGCTCTGTGG GCCCTGCGTC TTCTCCTTCC CCACAGGCTG TCCCCTGCCC TTCCTTTACC 2640
CCAGCTCCAT TCCCCGAGAC CCATCCTCCT CAGGGGCCGT ACATAGGCCC CCCCGAGCCC 2700
CCTCTCCCGT CTTTGTCCCC CCAGGCCCCC TCCTCTCTTG GAGAGGACCC CGACTCTGCT 2760
CAGCCTCCCC CCCTTTTCTC AAGCTCCCGC TCCAGCTCCC CCCTGCAGCT CAACCTGCTG 2820
CAGGAGGAGC TTCCCAAGCC AGCAGAGCCA CAGGGCGGCG CAGCCCTGCC AGAGAGTCTG 2880
CACGAGCCGC ACACCAAGGG GGACGATGCT CCCAGTGAGT CGGGTAACCA GGACAACCAG 2940
TCCACATCGA GTGAGCTGCT GGACCTGCTG CTGCATGAGG ACTCCCGCTC GGGCACGGGT 3000
TCAAACGTTT CGGGCAGCGG CTCGGGGGAG TCCGGCGGCT CCTTGGGCTC GGGGTCCAAT 3060
GGCTCAGGCT CTAATGGCAC CTCTGCCAGC CATACAGGGA GCAGCCAGTC CGGCAACAGC 3120
AGCAAGTACT TCGCCAGCAA CGACTCCTCG GACACGTCCC GCAGCAAGGC GCGCAAGAGC 3180
CAGGAGGTGC CGGAGCGGGC CAGCTTCGAG AAGCGCGCGG AAGACTCCCT GTGGACCATG 3240
ATCCAGCACA CCCCCGAGCC CATCATGATG AACTACCAGC TCCTGCCCAG GGACCAGGCC 3300
CAGGTTCTGA CGGAGGACCG CAAGAAGCTG CTGCTCCTGC AGCCTCTGCA GCCCTGGTTC 3360
ACAGAGGAGC AGAAGGAGGA GCTGGCTGAG GTGCATCCCT GGATCTGCCA GCATGGCCTG 3420
CCCCCGGAAA TCGACACACA GGGCTGCATC AGCTGTAACA GAACGGCAGA CCCGCCTGCA 3480
GAGCCTCAGA CTGCAGACAC CCCCGGCCCC ACCGCCAGCC CCCTGCGGGC CCA 3533
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-GaG-020965Gallus gallus44.38 1.00e-173 607.4
CGD-MuM-021078Mus musculus (Mouse)38.69 5.00e-140 496.9
CGD-OvA-022195Ovis aries42.88 1.00e-146 518.1
CGD-RaN-021797Rattus norvegicus41.58 6.00e-144 509.2
Gene Ontology

GO:0005515--protein binding
GO:0032922--circadian regulation of gene expression
GO:0006355--regulation of transcription, DNA-templated
GO:0009648--photoperiodism