CGDB Gene Information

Tag Content
CGDB ID CGD-CaP-050028
Ensembl Accession ENSCPOP00000016025.1
Protein Name PER3
Ensembl Information ENSCPOG00000022169; ENSCPOT00000021986
Organism Cavia porcellus
NCBI Taxa ID 10141
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 15 ZT 9 LD 6 duodenum Predicted from orthologs E1C8E2
ZT 0 ZT 12 LD 5 pineal gland Predicted from orthologs E1C8E2
ZT 15 ZT 3 LD 2 blood Predicted from orthologs P56645
CT 16 CT 4 DD2 2.7 human HaCaT keratinocytes Predicted from orthologs P56645
ZT 4 ZT 21 LD 3.5 human HaCaT keratinocytes Predicted from orthologs P56645
ZT 8 ZT 0 LD 4.6 brown adipose tissue Predicted from orthologs O70361
ZT 8 ZT 0 LD 2.46 epididymal white adipose tissue Predicted from orthologs O70361
ZT 12 ZT 0 LD 10 femur vertebra Predicted from orthologs O70361
ZT 8 ZT 4 LD 5.2 heart Predicted from orthologs O70361
ZT 12 ZT 0 LD 35 jejunum Predicted from orthologs O70361
CT 9 CT 21 DD1 2 SCN Predicted from orthologs O70361
ZT 8 ZT 16 LD 2.5 SCN Predicted from orthologs O70361
CT 15 CT 3 DD1 2 testis Predicted from orthologs O70361
CT 15 CT 3 DD1 4 liver Predicted from orthologs O70361
ZT 8 ZT 0 LD 14 lumbar vertebra Predicted from orthologs O70361
CT 0 CT 12 DD2 8.8 NIH-3T3 cells Predicted from orthologs O70361
ZT 8 ZT 0 LD 23 liver Predicted from orthologs O70361
ZT 6 ZT 18 LD 4 muscle Predicted from orthologs W5PL09
ZT 12 ZT 0 LD 25 abdominal adipose tissue Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 2.3 basolateral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 12 ZT 0 LD 5 entral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 4.5 hippocampus Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 14 nucleus accumbens core Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 5 nucleus accumbens shell Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 8 prefrontal cortex Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 6 SCN Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 2 ventral tegmental area Predicted from orthologs Q8CJE2
Descriptionperiod circadian clock 3 [Source:HGNC Symbol;Acc:HGNC:8847](View all)
Protein Sequence
(Fasta)		 ANSEFFQILG GHELPLADAT VYSPKELAAV AAELTCKNTD TFVAVFSFLS GRLVHVSEQS 60
TSILKCKKDF LESSHFVDLL APQDVRVFYT HTARAHLPFW NNWTQRASQY ESAPVKSFFC 120
RIHGDSGHKR CYSPFRIVPL VHVHSPALSE SEPCCLALVE KIHSGYEVAP QIPMDERIFT 180
TTHTPGCVFL EVDERAVPLL GYLPQDLIGT SVLTYLHPED RPVMVAIHQK VLKYAGHPPF 240
EHSPVRFRAQ DGDFIILDSS WSSFVNPWSW KVSFIIGRHK VRTRPLNEDV FATRISKMNN 300
NDRDITELQE QIHKLLLQPV HGRSSSSYGS LGSSRSQEQL LSTASSSKSS GHHAEKGTRR 360
GPTTLQQVYA RVSKMKNLGQ QLCTEPTTRS PAEPTKGTLT ELAGGGQCYA REALSSSQRL 420
SHGVTYTESC AGLRKGQRSP SYQQINCIHS VIRYLESCSA PDLKRKYVSR RNTASSSSEE 480
DRPLHSAHSA QALQAAAQTP AIPAPEVPAG APASGAARTL TLSTAALSVG PCSCCSTLVH 540
SPRVESAEDA SLACGPGGAL GTQPAALASE GLRCTGLSQA ALLAHTQKEG QDYVARFRER 600
LLSSPCSCCL QQESGSTAES CRVQGAAASR HSRPAGCRKG RHKRKKLPAP PGCCSSGSSV 660
CPHHKGLLYR AQPWGPAAAP APQAPGLALP TTTVLLPGQD TRLLPPLPVP AMTSLGTEDA 720
AAWGAAPAGL PTAPWPSSGL HAPPAFPAPY SDTSMAILLH APPICLPWSL PFSPHPRSGA 780
AGASEMPPAA PAVAPNLEPP PSIDSQGRED DKWETHSEEP PCLNSRSSSP LQLNLLQEEV 840
PGLWLSPAPA RRDLHPKAEH CVRGSRGRPD LSRTSVPKVS PSGTGSAASE GAYPPPRRVC 900
DPGRVSCPGP GLPQAVGPSK VTAARITVGP GQRVQSVRMS GPLGQSSLRQ ASSTSRSCGL 960
AGSSGSSVPL TRSDCSSELS EDKRQSPEGQ QEEARGCVPD DSIWRVIEWM PEHVLMTYQV 1020
PARVKEVVLR EDLERLESMR AQQPQFSPGQ KEELAKVRPW IQGQSVLQET RISVSRVTC 1079
Nucleotide Sequence
(Fasta)		 GCAAACAGTG AATTCTTCCA GATTCTCGGT GGACATGAGT TACCTCTGGC AGACGCGACA 60
GTGTACAGTC CCAAGGAGCT GGCTGCTGTT GCTGCAGAGC TCACTTGCAA GAACACAGAT 120
ACCTTTGTGG CAGTCTTTTC ATTTCTATCC GGAAGGTTAG TGCATGTGTC TGAACAGTCC 180
ACTTCGATCC TGAAATGTAA GAAAGATTTC CTGGAGTCCT CTCACTTTGT TGATCTGCTT 240
GCCCCTCAAG ATGTGAGGGT GTTCTACACA CACACTGCCC GAGCTCACCT TCCTTTCTGG 300
AACAACTGGA CCCAAAGAGC ATCGCAGTAT GAATCCGCGC CAGTGAAATC CTTTTTCTGC 360
AGGATCCATG GAGACAGCGG GCACAAGAGG TGCTACTCCC CGTTTCGGAT CGTCCCGTTG 420
GTTCATGTGC ACAGCCCTGC CCTCTCAGAG TCGGAACCTT GCTGCCTAGC GCTGGTTGAA 480
AAGATCCACT CTGGTTATGA AGTAGCTCCT CAAATTCCAA TGGATGAAAG AATTTTTACC 540
ACAACACATA CCCCAGGGTG TGTTTTTCTT GAAGTAGATG AAAGAGCAGT GCCTTTGCTG 600
GGTTACCTAC CTCAAGATCT GATTGGAACA TCAGTCCTAA CATACTTGCA CCCAGAAGAT 660
CGTCCTGTGA TGGTTGCGAT ACATCAAAAG GTCTTGAAGT ATGCGGGCCA TCCCCCCTTC 720
GAACACTCGC CCGTTAGATT TCGTGCTCAG GATGGAGACT TCATCATCCT GGACTCTAGC 780
TGGTCCAGCT TTGTGAACCC CTGGAGCTGG AAGGTTTCTT TTATCATTGG CAGGCATAAA 840
GTACGAACGC GCCCACTAAA TGAGGATGTT TTTGCTACCA GAATAAGCAA AATGAACAAT 900
AATGACAGAG ATATAACAGA ATTACAAGAA CAAATCCACA AACTTCTCTT GCAGCCGGTT 960
CACGGGAGAA GCTCCAGCAG CTACGGCAGC CTGGGCAGCA GCAGGTCACA GGAGCAGCTG 1020
CTCAGCACGG CCTCGTCCAG CAAGTCCAGT GGGCACCATG CGGAGAAGGG CACGCGCAGG 1080
GGCCCGACAA CCTTGCAGCA GGTCTACGCC CGTGTAAGCA AAATGAAGAA TCTGGGTCAG 1140
CAGCTGTGCA CTGAGCCAAC CACCAGATCA CCTGCCGAGC CCACGAAGGG GACGCTCACA 1200
GAGCTGGCGG GCGGGGGCCA GTGCTATGCG CGGGAGGCTT TGTCCTCCTC TCAGAGGCTG 1260
AGCCATGGAG TCACCTACAC CGAGTCTTGT GCAGGTTTGA GGAAAGGCCA GCGCAGCCCG 1320
TCTTACCAGC AGATAAACTG TATCCATAGT GTCATCAGGT ACCTGGAGAG CTGCAGTGCC 1380
CCCGACTTGA AGAGGAAGTA CGTCTCGCGT AGGAACACAG CTTCCTCGTC CTCAGAGGAG 1440
GACAGGCCGC TCCACAGCGC GCACAGCGCC CAGGCTCTGC AAGCTGCTGC ACAGACCCCC 1500
GCCATTCCCG CGCCGGAAGT GCCAGCAGGA GCCCCGGCCT CGGGTGCCGC GCGGACCCTG 1560
ACCCTGTCCA CCGCAGCGCT GAGCGTGGGC CCGTGCAGCT GCTGCAGCAC CCTGGTCCAC 1620
AGCCCTCGCG TGGAGTCAGC AGAGGATGCC TCTCTAGCGT GTGGGCCCGG CGGGGCCCTG 1680
GGCACACAGC CGGCTGCCCT GGCCTCAGAA GGGCTCAGGT GCACGGGGCT CTCACAGGCT 1740
GCGCTGCTGG CCCACACGCA GAAGGAGGGG CAGGACTACG TGGCCCGGTT CCGGGAGCGG 1800
CTGCTGTCCT CGCCCTGTAG CTGCTGCCTT CAGCAGGAGA GCGGAAGCAC GGCCGAGAGC 1860
TGCCGGGTCC AAGGGGCTGC GGCCTCCAGG CACAGCAGAC CGGCTGGATG CAGGAAGGGG 1920
CGGCACAAGC GGAAGAAGCT GCCAGCGCCG CCAGGCTGCT GCAGCTCGGG CAGCAGTGTG 1980
TGTCCCCACC ACAAGGGGCT GCTTTACAGG GCGCAGCCCT GGGGCCCAGC TGCAGCCCCG 2040
GCACCCCAGG CCCCAGGCCT GGCACTGCCC ACCACCACTG TGCTGCTTCC CGGCCAGGAC 2100
ACTCGGCTCC TGCCCCCACT GCCTGTCCCA GCCATGACTT CCCTGGGAAC GGAGGACGCC 2160
GCAGCCTGGG GGGCCGCACC CGCGGGCCTG CCCACAGCAC CCTGGCCCAG CAGCGGCCTG 2220
CACGCTCCTC CTGCTTTCCC CGCTCCTTAC TCGGATACTT CCATGGCCAT CCTCCTACAC 2280
GCCCCTCCCA TCTGTCTTCC TTGGTCACTG CCCTTCTCTC CACATCCCCG CTCGGGGGCC 2340
GCAGGCGCTT CTGAAATGCC ACCCGCAGCA CCAGCAGTGG CTCCAAACCT GGAACCGCCT 2400
CCTTCAATCG ACAGCCAAGG GAGAGAGGAC GACAAATGGG AGACACACAG TGAGGAGCCT 2460
CCATGCCTGA ATTCGAGGAG CAGCTCGCCA CTGCAGCTGA ATCTGCTCCA GGAAGAGGTG 2520
CCGGGCCTGT GGCTGTCTCC CGCGCCAGCG AGAAGGGACC TTCACCCCAA GGCTGAGCAC 2580
TGTGTCAGAG GGAGCAGGGG CCGCCCCGAC CTGTCCAGGA CATCCGTTCC CAAGGTGTCT 2640
CCGTCCGGAA CTGGCTCTGC AGCCTCAGAA GGGGCATACC CTCCACCACG GAGAGTCTGT 2700
GACCCGGGAC GCGTCTCCTG CCCTGGCCCG GGCCTGCCAC AAGCCGTAGG GCCGAGTAAA 2760
GTGACAGCAG CCAGGATAAC TGTGGGGCCA GGGCAGCGAG TGCAGTCAGT CCGAATGAGC 2820
GGGCCTCTTG GGCAAAGTAG CCTCAGGCAG GCGTCCTCCA CCTCACGGTC CTGTGGGTTA 2880
GCAGGAAGCA GCGGCAGCAG TGTCCCCCTC ACCAGGAGCG ACTGCTCTTC TGAACTCTCC 2940
GAGGACAAGC GGCAGTCTCC AGAGGGGCAG CAGGAGGAAG CCCGTGGCTG CGTGCCCGAC 3000
GACTCCATCT GGAGGGTGAT TGAATGGATG CCTGAACATG TGCTCATGAC CTACCAGGTC 3060
CCCGCGAGGG TTAAAGAAGT CGTGCTGAGA GAAGACCTGG AGAGGCTGGA AAGCATGCGA 3120
GCGCAGCAGC CCCAGTTTTC TCCTGGACAG AAGGAAGAGC TGGCCAAGGT GCGTCCGTGG 3180
ATCCAAGGCC AGAGTGTCCT TCAAGAAACA CGCATCTCAG TCAGCAGAGT AACATGC 3237
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-GaG-020965Gallus gallus42.48 2.00e-169 593.2
CGD-HoS-021431Homo sapiens (Human)51.13 0.00e+00 978
CGD-MuM-021078Mus musculus (Mouse)48.48 0.00e+00 886.7
CGD-OvA-022195Ovis aries50.82 0.00e+00 788.5
CGD-RaN-021797Rattus norvegicus48.16 0.00e+00 872.1
Gene Ontology

GO:0005515--protein binding
GO:0032922--circadian regulation of gene expression
GO:0045187--regulation of circadian sleep/wake cycle, sleep
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0031625--ubiquitin protein ligase binding
GO:0019900--kinase binding
GO:0007623--circadian rhythm