CGDB Gene Information

Tag Content
CGDB ID CGD-PrC-048229
Ensembl Accession ENSPCAP00000004650.1
Protein Name PER3
Ensembl Information ENSPCAG00000004848; ENSPCAT00000004963
Organism Procavia capensis
NCBI Taxa ID 9813
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 15 ZT 9 LD 6 duodenum Predicted from orthologs E1C8E2
ZT 0 ZT 12 LD 5 pineal gland Predicted from orthologs E1C8E2
ZT 8 ZT 0 LD 4.6 brown adipose tissue Predicted from orthologs O70361
ZT 8 ZT 0 LD 2.46 epididymal white adipose tissue Predicted from orthologs O70361
ZT 12 ZT 0 LD 10 femur vertebra Predicted from orthologs O70361
ZT 8 ZT 4 LD 5.2 heart Predicted from orthologs O70361
ZT 12 ZT 0 LD 35 jejunum Predicted from orthologs O70361
CT 9 CT 21 DD1 2 SCN Predicted from orthologs O70361
ZT 8 ZT 16 LD 2.5 SCN Predicted from orthologs O70361
CT 15 CT 3 DD1 2 testis Predicted from orthologs O70361
CT 15 CT 3 DD1 4 liver Predicted from orthologs O70361
ZT 8 ZT 0 LD 14 lumbar vertebra Predicted from orthologs O70361
CT 0 CT 12 DD2 8.8 NIH-3T3 cells Predicted from orthologs O70361
ZT 8 ZT 0 LD 23 liver Predicted from orthologs O70361
ZT 6 ZT 18 LD 4 muscle Predicted from orthologs W5PL09
ZT 12 ZT 0 LD 25 abdominal adipose tissue Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 2.3 basolateral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 12 ZT 0 LD 5 entral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 4.5 hippocampus Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 14 nucleus accumbens core Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 5 nucleus accumbens shell Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 8 prefrontal cortex Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 6 SCN Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 2 ventral tegmental area Predicted from orthologs Q8CJE2
Descriptionperiod circadian clock 3 [Source:HGNC Symbol;Acc:HGNC:8847](View all)
Protein Sequence
(Fasta)		 LPRDQAPDSG ERWAQDPPLA AEPDARWRQT YQPPRRYEDS NSKRQDRIRL SEEVTMVVQE 60
MKKYFPSERH SKPSTLDALS YALRCVRSVQ ANSEVFQFLS QNGAPQADVT VYSLEKLTSI 120
ASEHTSKNTX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180
XXXXXXXXXX XXXXXXXTSQ YEFAPVKSFF CRIRGRGGGQ QEKRHCPVRI IPYLIHMHSP 240
TQQELPCCLM LVEKIRSGYE AAQIPADKRI FTTTHTPGCV FLEVDEXXXX XXXXXXXXXX 300
XXXXXXXXXX XXXXXXXXXX XXXLKYAGQP PFEHSPIRFC TQNGDYVILE SSWASFVNPW 360
SRKVSFIIGR HQVQTXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PVHAGDSSGY 420
GSLGSSGSQE HYVSITSSSE SSGHCVEKTQ KEPMTLQQVC ASVNKIKNQG QQLYIESMMK 480
SPNMPAMRAC TEPVGGKKEQ KAFLSFQTLK NHSKHAESCK DMRKGQHSPS YQQIHCIDSV 540
IRYLKSCNIP PLKRKCISCT NTNSSSSEDD KQVYKAHGVH TLRAVSQIPV IAKSEMTTAG 600
QPADVEEEGP QTLSTKAMNL VSGVSHCSYS STMVHVPLAE PAKVTAAEEA TTVFEPWNLN 660
LHPAPQTSEE FKHVGLTKAV LSAHTQKEEQ NYVDKFREKI LSSPYSSYLQ RESKSKMKYS 720
YVQEDSTAKQ SRSAGSKKGK HKRKKLPVPS DSNDSTTCSS LHRRHRDKQP CGPPGASPPH 780
ALGLSFPSTV VMPSQAPCSM PTHPLPGLAS LGGASVASGD AVPCLSRPPP SGDLTFVPAL 840
PASYLDTFMT VFLHAPPACP LLLPSLSPYP FLGAADAPET PPSISPVAPD LEPPSSVTNQ 900
RRVEERWETH DEHPFLSSWS SSPLQLDLLH EEMPRSSESP DRMKRDVCTE AEWQHVLGSR 960
GKNGDCPTAS ELSTTFLHRT VSGTCSAASG NSDSSFATSD YSSEISPNGQ ITQDIQKKET 1020
PPSCAQESIW RMMEQSPECI LMTYQIPERV KEAVLKEDLE KLESMRQGQP QFSREQREEL 1080
AQVHSWIQSH TVPQEIDIQG CLTCENRNLV GEAAECTDQG SS 1122
Nucleotide Sequence
(Fasta)		 CTGCCCCGCG ATCAGGCTCC CGACTCCGGT GAACGCTGGG CTCAGGACCC GCCCCTGGCC 60
GCCGAACCCG ATGCGCGGTG GCGCCAGACG TACCAGCCGC CCAGGAGATA CGAGGACAGC 120
AACAGTAAAC GGCAGGATCG AATCAGACTT TCTGAAGAAG TTACGATGGT GGTCCAGGAA 180
ATGAAAAAGT ACTTCCCATC GGAGAGGCAC AGTAAACCGA GCACTCTAGA TGCCCTCAGC 240
TATGCCCTTC GGTGTGTACG CAGTGTGCAA GCAAACAGTG AGGTTTTCCA GTTTCTCAGT 300
CAGAATGGAG CACCTCAAGC AGATGTGACC GTGTACAGTC TTGAGAAGCT TACCAGTATC 360
GCCTCAGAAC ACACTTCCAA AAACACANNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 420
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 480
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 540
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNC AACCTCGCAG 600
TATGAATTTG CTCCTGTGAA ATCCTTTTTC TGCAGGATAC GTGGTCGTGG AGGTGGACAG 660
CAAGAGAAGC GTCACTGCCC AGTGCGGATT ATCCCCTATT TGATTCACAT GCACAGCCCC 720
ACCCAGCAGG AGCTGCCTTG CTGTCTCATG CTGGTTGAGA AGATTCGCTC TGGTTATGAG 780
GCTGCTCAAA TCCCAGCGGA CAAAAGAATT TTTACCACGA CACATACACC AGGGTGTGTT 840
TTTCTTGAAG TAGATGAAAG NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 900
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 960
NNNNNNNTCT TGAAGTATGC AGGCCAGCCC CCATTTGAAC ATTCACCGAT TAGATTTTGT 1020
ACTCAAAATG GAGATTACGT CATACTGGAA TCCAGTTGGG CTAGCTTTGT GAACCCCTGG 1080
AGCCGGAAGG TGTCTTTCAT CATTGGTCGG CATCAAGTTC AAACNNNNNN NNNNNNNNNN 1140
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1200
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN CCAGTTCATG CAGGTGATTC CAGTGGCTAC 1260
GGAAGCCTTG GAAGCAGTGG CTCCCAGGAG CATTACGTCA GCATCACATC TTCTAGTGAG 1320
TCCAGTGGGC ACTGTGTGGA GAAAACACAA AAGGAGCCAA TGACTTTGCA GCAGGTCTGT 1380
GCCAGTGTGA ACAAGATAAA GAATCAGGGG CAACAGCTCT ACATTGAGTC CATGATGAAA 1440
TCTCCAAACA TGCCAGCAAT GAGAGCGTGC ACAGAACCAG TGGGCGGTAA GAAGGAGCAG 1500
AAGGCCTTTT TGTCCTTCCA GACACTGAAA AATCATAGCA AGCATGCTGA GTCTTGTAAG 1560
GATATGAGAA AAGGACAGCA CAGCCCATCC TATCAGCAGA TCCACTGTAT TGATAGTGTT 1620
ATCAGATATC TGAAGAGCTG CAACATTCCA CCTTTGAAAA GAAAGTGCAT ATCCTGTACG 1680
AATACAAATT CTTCATCTTC AGAAGACGAC AAACAAGTCT ACAAGGCACA TGGTGTCCAT 1740
ACACTGCGAG CTGTTTCTCA GATCCCAGTC ATAGCTAAAT CAGAAATGAC GACAGCTGGA 1800
CAGCCTGCAG ATGTTGAGGA AGAGGGTCCA CAGACCCTGT CCACGAAGGC CATGAACTTG 1860
GTGTCCGGCG TGAGCCATTG CAGTTACAGC AGCACCATGG TTCACGTCCC ACTGGCAGAG 1920
CCAGCAAAAG TGACTGCAGC AGAGGAAGCC ACTACAGTGT TCGAGCCTTG GAATCTGAAC 1980
CTACACCCAG CTCCACAGAC CTCAGAAGAA TTTAAACATG TGGGGCTCAC CAAGGCTGTC 2040
TTATCAGCCC ACACGCAAAA GGAAGAGCAG AATTATGTTG ACAAATTCCG TGAAAAGATC 2100
CTGTCCTCAC CTTACAGCTC CTATCTTCAG CGGGAAAGCA AAAGCAAAAT GAAATACTCA 2160
TACGTTCAAG AAGATTCTAC TGCTAAACAG TCCAGGTCAG CTGGGAGCAA GAAAGGGAAG 2220
CACAAACGGA AGAAACTGCC TGTGCCCTCT GACAGTAATG ACTCGACCAC ATGTTCATCA 2280
CTTCACAGAC GACATCGGGA CAAACAGCCC TGTGGCCCTC CTGGGGCCTC CCCACCACAT 2340
GCCCTGGGCC TGTCATTCCC CTCCACAGTT GTGATGCCTA GCCAGGCCCC TTGTAGCATG 2400
CCAACACATC CCCTCCCAGG CCTGGCCTCC CTGGGTGGGG CAAGTGTGGC CTCAGGAGAT 2460
GCAGTGCCGT GTCTGTCCAG GCCTCCTCCG TCTGGGGACC TGACGTTTGT CCCAGCCCTC 2520
CCTGCTTCTT ACCTGGACAC ATTCATGACT GTGTTTCTGC ACGCGCCCCC TGCCTGTCCC 2580
CTGTTATTGC CGTCATTGTC TCCTTACCCA TTCCTGGGAG CAGCAGACGC TCCCGAAACA 2640
CCACCTTCCA TATCTCCAGT GGCTCCAGAC CTGGAACCAC CATCATCAGT CACCAACCAA 2700
AGGAGGGTGG AGGAAAGATG GGAGACACAC GATGAACACC CGTTTCTTTC ATCCTGGAGC 2760
AGCTCACCGC TGCAGTTAGA CTTACTTCAC GAGGAAATGC CCAGATCTTC TGAATCTCCA 2820
GATCGGATGA AAAGGGATGT TTGCACAGAA GCTGAGTGGC AACATGTTCT AGGCAGCAGA 2880
GGGAAGAATG GCGACTGTCC TACAGCCAGT GAACTGTCCA CTACATTCCT TCACAGGACT 2940
GTTTCTGGAA CCTGTTCTGC AGCATCAGGA AACAGTGACA GCAGCTTTGC TACTAGTGAT 3000
TACTCTTCTG AAATCTCCCC AAATGGGCAG ATAACCCAGG ACATACAGAA AAAAGAAACA 3060
CCTCCCAGTT GTGCCCAAGA GTCCATCTGG AGAATGATGG AACAGTCGCC TGAGTGCATT 3120
CTAATGACCT ATCAGATACC TGAGAGGGTT AAAGAAGCTG TACTAAAGGA AGACCTGGAA 3180
AAGCTGGAGA GCATGAGGCA GGGACAGCCC CAGTTTTCTC GTGAACAGAG GGAGGAGCTG 3240
GCCCAGGTGC ATTCTTGGAT TCAGAGCCAC ACTGTCCCTC AAGAAATAGA CATCCAAGGC 3300
TGTCTCACTT GTGAAAACAG AAACTTAGTT GGTGAAGCCG CAGAATGCAC TGACCAGGGT 3360
AGCAGTTGA 3369
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-GaG-020965Gallus gallus37.18 2.00e-166 583.2
CGD-MuM-021078Mus musculus (Mouse)47.1 0.00e+00 738
CGD-OvA-022195Ovis aries46.66 0.00e+00 878.2
CGD-RaN-021797Rattus norvegicus46.66 0.00e+00 732.3
Gene Ontology

GO:0045187--regulation of circadian sleep/wake cycle, sleep
GO:0007623--circadian rhythm
GO:0019900--kinase binding
GO:0031625--ubiquitin protein ligase binding
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0005515--protein binding