CGDB Gene Information

Tag Content
CGDB ID CGD-EqC-051045
Ensembl Accession ENSECAP00000016650.1
Protein Name PER3
Ensembl Information ENSECAG00000018928; ENSECAT00000020291
Organism Equus caballus
NCBI Taxa ID 9796
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 15 ZT 9 LD 6 duodenum Predicted from orthologs E1C8E2
ZT 0 ZT 12 LD 5 pineal gland Predicted from orthologs E1C8E2
ZT 8 ZT 0 LD 4.6 brown adipose tissue Predicted from orthologs O70361
ZT 8 ZT 0 LD 2.46 epididymal white adipose tissue Predicted from orthologs O70361
ZT 12 ZT 0 LD 10 femur vertebra Predicted from orthologs O70361
ZT 8 ZT 4 LD 5.2 heart Predicted from orthologs O70361
ZT 12 ZT 0 LD 35 jejunum Predicted from orthologs O70361
CT 9 CT 21 DD1 2 SCN Predicted from orthologs O70361
ZT 8 ZT 16 LD 2.5 SCN Predicted from orthologs O70361
CT 15 CT 3 DD1 2 testis Predicted from orthologs O70361
CT 15 CT 3 DD1 4 liver Predicted from orthologs O70361
ZT 8 ZT 0 LD 14 lumbar vertebra Predicted from orthologs O70361
CT 0 CT 12 DD2 8.8 NIH-3T3 cells Predicted from orthologs O70361
ZT 8 ZT 0 LD 23 liver Predicted from orthologs O70361
ZT 6 ZT 18 LD 4 muscle Predicted from orthologs W5PL09
ZT 12 ZT 0 LD 25 abdominal adipose tissue Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 2.3 basolateral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 12 ZT 0 LD 5 entral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 4.5 hippocampus Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 14 nucleus accumbens core Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 5 nucleus accumbens shell Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 8 prefrontal cortex Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 6 SCN Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 2 ventral tegmental area Predicted from orthologs Q8CJE2
Descriptionperiod circadian clock 3 [Source:HGNC Symbol;Acc:HGNC:8847](View all)
Protein Sequence
(Fasta)		 SYREQQDRNR VSEELRMVVQ EMVKYLPSER HSKRSTLDAL NYALRCVHSV QANSEFFQIL 60
SQNGAPQADV TGYSLEELAT IASGHTSKNT DTFVAVFSFL SGRVVHISEQ AASILNCKKA 120
FLESSHFVEL LAPRDVRVFY THTAHAQLPF WNNWTQRAAQ YDYAPAKSFF CRIRGGEDSK 180
QEKRYSPFQI LPYLIHVHSP AQLESEPCCL MLVEKVHSGY EAPRIPVDKR IFTTTHSPGC 240
VFLEIDERAV PLLGYLPQDL IGTSVLTYLH PEDRSLMVAI HQKVLKYAGH PPFEHSPIRF 300
CTQNGDYIIL DSSWSSFVNP WSRKVSFIIG RHKVRTSPLN EDVFATRIKK MNSNDKDITE 360
LQEQIHKLLL QPVHVSASSG YESLGSSGSQ EYHLSAASSS ESSGHCAEEA QKEPLTLQQV 420
YASVNKIKNL GQQLYIESMT RSPDKQVMGT RVGQLGDEQK AFSSFRTLKN NSVYTESCED 480
LRKDQHSPSY QQISCIDSVI RYLKSYNIPA LKRKCISCAN TTSSSSEEDR ENHQADDVQA 540
SQAIPKSEMP TSGRCTDTEA GAPQTLSAAA LGLGSGISQC SYSSAIIHVP PLESEDAPQA 600
LEPWTLSTHP APLTSEERRH GGLTQAVLSA HTQKEEQNYV DKFREKMLSS PYSSYLQQES 660
GSKAQYSHVQ GNSTSRQTRS AGCRKGKHKW KKLPVPSDGR SSKDTFCPHC RGEVQNVQPH 720
CPAPALPPPA TGLSFPAAVM VPGQAPYLIP AFPLPAVSPL GREHTASGAA LECLPKPLLS 780
SSSQSVPALP SPHLDTFLTI FLHDPPMCPL LSPSFSPYPL LGATGFSEIP SSVSAMAPNL 840
EPPSSVVSQR RDEEKWETQS EEHPFLSSRS SSPLQLDLLQ EALSRSWEFS DPTRRDVCPE 900
AEYQSVTGSS GNSNSHFMAG ELSMVLLRQE SPSGTGSAAS GSSDSSIYFA TSDFSSEITP 960
NGQQSQDCSQ RKETLPAVAE ESIWRMIERT PECVLMTYQV PERVKEIVLK EDLAKLESMR 1020
RQQPQFSHGQ REELAQVHSW VQSQTVPQDI DIRGCVTCTN KGSLGDATES CGQDASEDTS 1080
Nucleotide Sequence
(Fasta)		 TCTTACAGGG AACAGCAAGA TCGAAACAGA GTTTCTGAAG AACTTAGAAT GGTTGTCCAA 60
GAAATGGTGA AATACCTGCC ATCGGAGAGA CACAGTAAGC GGAGCACCCT AGATGCCCTC 120
AACTATGCCC TTCGCTGTGT ACACAGTGTG CAAGCAAACA GTGAGTTTTT CCAGATTCTC 180
AGTCAGAACG GAGCACCTCA AGCAGATGTG ACCGGGTACA GTCTTGAAGA GCTGGCCACT 240
ATTGCTTCAG GACACACTTC CAAAAACACA GATACCTTTG TGGCAGTTTT TTCATTTCTG 300
TCCGGAAGGG TAGTGCACAT TTCTGAACAG GCTGCTTCGA TCCTGAATTG TAAGAAAGCT 360
TTCTTGGAGT CCTCTCATTT TGTTGAACTG CTCGCCCCTC GAGATGTGAG GGTCTTCTAC 420
ACACACACCG CCCACGCTCA GCTTCCCTTC TGGAACAACT GGACCCAAAG AGCCGCGCAG 480
TACGACTATG CTCCTGCGAA GTCCTTTTTC TGCCGCATCC GTGGAGGTGA AGACAGCAAG 540
CAGGAGAAGC GTTACTCCCC ATTCCAGATC CTCCCCTATT TGATTCATGT GCACAGCCCT 600
GCCCAGCTGG AATCTGAGCC CTGCTGTCTC ATGCTGGTCG AGAAGGTTCA CTCTGGCTAC 660
GAAGCTCCCC GAATCCCAGT GGATAAAAGG ATTTTTACCA CAACACACAG CCCAGGGTGT 720
GTTTTTCTTG AAATAGACGA AAGAGCCGTG CCTTTGCTGG GTTATCTACC TCAGGATTTG 780
ATTGGAACAT CTGTCTTAAC GTATTTGCAC CCAGAAGACC GCTCTCTCAT GGTCGCCATA 840
CACCAGAAAG TCTTGAAGTA TGCAGGCCAT CCTCCCTTTG AACATTCACC CATTAGATTT 900
TGTACTCAAA ATGGAGATTA CATCATATTG GATTCCAGCT GGTCCAGCTT TGTGAACCCA 960
TGGAGCCGGA AGGTCTCTTT CATCATTGGT CGGCATAAAG TTCGAACGAG TCCACTAAAT 1020
GAGGATGTTT TTGCTACCAG AATAAAAAAG ATGAACAGTA ATGACAAAGA CATAACAGAA 1080
TTACAAGAAC AAATTCACAA ACTTCTCTTA CAGCCGGTTC ATGTGAGCGC CTCCAGTGGC 1140
TACGAAAGCC TGGGAAGCAG TGGCTCACAG GAGTACCACC TCAGCGCAGC ATCTTCCAGC 1200
GAGTCCAGCG GGCACTGCGC GGAGGAGGCA CAGAAGGAAC CATTGACTTT GCAGCAGGTG 1260
TATGCCAGTG TAAACAAGAT CAAGAATCTA GGTCAGCAGC TCTACATTGA GTCAATGACC 1320
AGATCACCAG ATAAGCAAGT GATGGGCACA CGCGTGGGCC AGCTTGGAGA TGAGCAGAAG 1380
GCCTTTTCTT CTTTCCGGAC ATTGAAAAAT AATAGCGTGT ACACTGAGTC TTGTGAGGAT 1440
TTGAGAAAAG ATCAGCATAG CCCATCCTAT CAGCAGATAA GCTGTATTGA TAGTGTTATC 1500
AGATACCTGA AGAGCTACAA CATTCCAGCT TTGAAAAGAA AGTGTATATC CTGTGCAAAC 1560
ACAACTTCTT CATCCTCAGA AGAAGACAGA GAAAACCACC AGGCAGATGA TGTCCAAGCA 1620
TCGCAAGCCA TACCTAAATC AGAAATGCCC ACCAGTGGAC GGTGCACAGA CACTGAAGCG 1680
GGAGCTCCCC AGACCCTGTC CGCGGCGGCG CTGGGCCTGG GCTCTGGCAT CAGCCAGTGC 1740
AGTTACAGCA GTGCCATCAT CCACGTCCCA CCCCTAGAGT CAGAGGATGC CCCCCAAGCG 1800
CTTGAGCCCT GGACCCTAAG CACCCACCCG GCTCCACTCA CCTCGGAGGA ACGTAGGCAC 1860
GGGGGGCTCA CACAGGCAGT CCTGTCAGCC CACACACAGA AGGAAGAGCA GAACTATGTT 1920
GATAAGTTCC GGGAAAAGAT GCTGTCCTCA CCCTACAGCT CCTATCTTCA GCAAGAAAGT 1980
GGAAGCAAAG CTCAATATTC ACATGTTCAA GGTAATTCGA CTTCCAGGCA GACCCGGTCA 2040
GCCGGTTGCC GGAAGGGGAA GCACAAGTGG AAGAAGCTGC CTGTGCCGTC AGACGGCAGA 2100
AGCTCCAAGG ACACCTTCTG TCCCCACTGC AGAGGAGAGG TCCAGAACGT TCAGCCCCAC 2160
TGCCCCGCCC CTGCCTTGCC TCCTCCCGCC ACCGGCCTGT CCTTCCCAGC TGCAGTGATG 2220
GTTCCCGGCC AGGCCCCTTA TCTCATACCA GCTTTCCCCC TCCCAGCCGT GAGCCCTCTG 2280
GGAAGAGAAC ACACAGCATC GGGTGCTGCA CTGGAGTGTC TCCCTAAGCC GCTTCTGTCC 2340
AGCAGCTCGC AGTCTGTTCC AGCTCTCCCT TCTCCTCACT TAGACACTTT CTTGACCATT 2400
TTCCTGCATG ACCCCCCTAT GTGTCCTCTG TTGTCACCAT CATTCTCCCC ATATCCACTT 2460
TTGGGAGCAA CAGGCTTTTC TGAAATACCA TCCTCAGTAT CAGCAATGGC TCCAAACCTG 2520
GAACCACCGT CTTCAGTCGT CAGCCAAAGG AGAGATGAGG AGAAATGGGA GACACAGAGT 2580
GAAGAGCACC CATTCCTTAG CTCAAGGAGC AGCTCCCCAC TGCAGCTAGA CTTACTGCAG 2640
GAAGCCCTGT CCAGATCCTG GGAGTTTTCA GACCCGACGA GAAGGGATGT TTGCCCAGAA 2700
GCTGAGTATC AGAGTGTTAC AGGCAGCAGT GGGAATAGCA ACAGTCATTT TATGGCCGGT 2760
GAGCTGTCCA TGGTGTTACT CCGCCAGGAG TCTCCGTCTG GAACTGGTTC TGCAGCATCA 2820
GGAAGCAGTG ACAGCAGTAT ATACTTTGCT ACGAGTGATT TTTCTTCTGA AATCACCCCA 2880
AATGGGCAGC AATCTCAGGA TTGCTCTCAG AGAAAAGAAA CACTTCCCGC TGTAGCTGAA 2940
GAGTCCATCT GGAGAATGAT AGAGCGAACC CCTGAGTGCG TTCTGATGAC ATACCAGGTA 3000
CCGGAAAGGG TTAAAGAAAT TGTACTGAAA GAAGACCTAG CAAAGCTAGA AAGCATGAGG 3060
CGACAGCAGC CGCAGTTTTC TCACGGACAG AGGGAGGAGC TGGCCCAGGT GCATTCCTGG 3120
GTTCAGAGCC AGACTGTCCC TCAAGACATA GACATCCGGG GCTGTGTCAC TTGCACAAAC 3180
AAGGGGTCAC TTGGTGATGC TACAGAATCC TGTGGTCAGG ATGCGTCAGA AGACACCAGT 3240
TGA 3243
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-GaG-020965Gallus gallus46.54 0.00e+00 827
CGD-MuM-021078Mus musculus (Mouse)60.52 0.00e+00 1238
CGD-OvA-022195Ovis aries63 0.00e+00 1289.2
CGD-RaN-021797Rattus norvegicus60.35 0.00e+00 1245.3
Gene Ontology

GO:0032922--circadian regulation of gene expression
GO:0005515--protein binding
GO:0006355--regulation of transcription, DNA-templated
GO:0045187--regulation of circadian sleep/wake cycle, sleep
GO:0000122--negative regulation of transcription from RNA polymerase II promoter
GO:0031625--ubiquitin protein ligase binding
GO:0019900--kinase binding
GO:0007623--circadian rhythm