CGDB Gene Information

Tag Content
CGDB ID CGD-PtV-052486
Ensembl Accession ENSPVAP00000005111.1
Protein Name PER3
Ensembl Information ENSPVAG00000005395; ENSPVAT00000005396
Organism Pteropus vampyrus
NCBI Taxa ID 132908
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 12 ZT 0 LD >10 Predicted from orthologs Q65ZG8
ZT 15 ZT 9 LD 6 duodenum Predicted from orthologs E1C8E2
ZT 0 ZT 12 LD 5 pineal gland Predicted from orthologs E1C8E2
ZT 8 ZT 0 LD 4.6 brown adipose tissue Predicted from orthologs O70361
ZT 8 ZT 0 LD 2.46 epididymal white adipose tissue Predicted from orthologs O70361
ZT 12 ZT 0 LD 10 femur vertebra Predicted from orthologs O70361
ZT 8 ZT 4 LD 5.2 heart Predicted from orthologs O70361
ZT 12 ZT 0 LD 35 jejunum Predicted from orthologs O70361
CT 9 CT 21 DD1 2 SCN Predicted from orthologs O70361
ZT 8 ZT 16 LD 2.5 SCN Predicted from orthologs O70361
CT 15 CT 3 DD1 2 testis Predicted from orthologs O70361
CT 15 CT 3 DD1 4 liver Predicted from orthologs O70361
ZT 8 ZT 0 LD 14 lumbar vertebra Predicted from orthologs O70361
CT 0 CT 12 DD2 8.8 NIH-3T3 cells Predicted from orthologs O70361
ZT 8 ZT 0 LD 23 liver Predicted from orthologs O70361
ZT 6 ZT 18 LD 4 muscle Predicted from orthologs W5PL09
ZT 12 ZT 0 LD 25 abdominal adipose tissue Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 2.3 basolateral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 12 ZT 0 LD 5 entral nucleus of the amygdala Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 4.5 hippocampus Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 14 nucleus accumbens core Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 5 nucleus accumbens shell Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 8 prefrontal cortex Predicted from orthologs Q8CJE2
ZT 0 ZT 12 LD 6 SCN Predicted from orthologs Q8CJE2
ZT 4 ZT 16 LD 2 ventral tegmental area Predicted from orthologs Q8CJE2
Descriptionperiod circadian clock 3 [Source:HGNC Symbol;Acc:HGNC:8847](View all)
Protein Sequence
(Fasta)		 MSSGKSHGSR GRRTRGETLG KDPEELWRQK YQPQSKYLES SNSEQQDRNR VSEELITVVQ 60
EMKKYFPSEK HNKPSTLDAL NYALRCVHSV QANSEFFQIL SQNGAPPADV TAYSLEELAS 120
IASEHTSKNT DTFVAVFSFL SGRLVHISEQ ATSILNCKKD FLESSHFVEL LAPQDVRVFC 180
THTAHAQLPF WDNWIRRAAS QREYPPEKPF FCRIRGGEDR KQEKHCYPFR IIPYLDHVQN 240
SAGREPEPCC LTLAEKIHSG YEAPRIPVDK RIFTTTHTPG CVFLEIDERA VPLLGYLPQD 300
LVGMSVLTYL HPEDRPLMVA IHQKVLKYAG RPPFEHSPVR FCTQNGDYIR LDSSWSSFVN 360
PWSRKVSFII GRHKVRTSPL NEDVFANRIK KTNNIDKDIT ELQEQIHKLL LQPVPMSASS 420
GYGSLGSSGS QEQQVSVASS SESSGHCAED ARKEPLTLQQ VYASVNKIKN LGQQLYIESM 480
TRSPSQQATG VHGPAGKQKA FSSFQTLKNN STYTESYEDL RKEQHSPSYQ QINCIDSVIR 540
YLRSYSIPAL KRKCISWTNT TSSSEEDRHN HKAGAGQASQ AADPQIPAAP TSEPPPNGPA 600
PDAKGRAART PSTAAPSLGS GVSQCSYSST IVHAPPPESA RDTTPACEAW PPSAHPAPLT 660
PDEFRHVGLT KAVLSAHTQK EEQNYVDKFR EKILSPPYSS YLQQEGRGKA KYSYVQGESS 720
SKQSRPAAGR KGKHKRKKLL PTDSCSARDA CCPHLTARVQ DAQPWWPAAT PAPGLSFPAA 780
VLVPSPAPCL VPAVPALPAV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF 840
VTVFLPDPPI WPLAPSCTPF LGAADSSITP CLVSAAAANQ EPPFSVIDRS RPRGPEETRS 900
EGCLSVPSGT SSPLQLSFLG EVAPGAREPA GPHTQCQCVT GNGGKKNCGF TASDLSAASL 960
HKEAPCRLDS AAAGSSDSSV YFTSSDDSPD IPPNGQPSRD ALETAAFPVA EESIWTMIKQ 1020
TPECILMTYQ VPERVKEIVL REDLGKLDSM RQQQPQFSPG QRAELAAEHP WLQSQTIPPE 1080
IDTQGCVTCK QEDSTGEAAD LYGQVPAGDS S 1111
Nucleotide Sequence
(Fasta)		 ATGTCCAGCG GTAAATCCCA CGGCTCCAGG GGGAGGAGGA CCAGGGGCGA GACTCTGGGG 60
AAGGACCCTG AGGAGTTGTG GCGCCAGAAA TACCAGCCTC AGAGCAAATA CCTGGAGAGC 120
AGCAACAGTG AACAGCAAGA TCGAAACAGA GTTTCTGAAG AACTTATAAC GGTTGTCCAA 180
GAAATGAAAA AATACTTCCC GTCAGAGAAA CACAACAAAC CAAGCACTCT CGATGCCCTC 240
AACTATGCCC TTCGCTGTGT ACACAGTGTG CAAGCAAACA GTGAGTTTTT CCAGATTCTC 300
AGTCAAAATG GAGCACCTCC AGCAGATGTG ACCGCGTACA GTCTGGAGGA GCTGGCCTCT 360
ATTGCTTCAG AGCACACTTC CAAAAACACA GATACCTTTG TGGCAGTTTT TTCATTTCTG 420
TCCGGAAGGT TAGTGCACAT TTCTGAACAG GCTACTTCGA TCCTGAATTG TAAGAAAGAC 480
TTCCTGGAGT CCTCTCACTT TGTGGAGCTG CTCGCCCCTC AGGATGTCAG GGTGTTCTGC 540
ACACACACTG CCCACGCTCA GCTTCCCTTT TGGGACAACT GGATCCGAAG AGCAGCGTCA 600
CAGCGTGAAT ACCCTCCAGA GAAACCCTTC TTCTGCAGGA TCCGTGGGGG TGAAGACAGA 660
AAGCAGGAGA AGCACTGCTA CCCATTCCGG ATTATCCCCT ATCTCGATCA CGTGCAGAAC 720
TCCGCCGGTC GGGAGCCTGA GCCCTGCTGT CTCACCCTTG CAGAGAAGAT TCACTCTGGT 780
TACGAAGCTC CTCGAATCCC AGTGGATAAA AGAATTTTTA CCACAACACA CACTCCAGGG 840
TGTGTTTTCC TTGAAATAGA TGAAAGAGCT GTGCCTTTGC TGGGATACCT GCCTCAGGAC 900
CTGGTCGGGA TGTCTGTCTT AACGTATTTA CACCCAGAAG ACCGTCCTCT GATGGTCGCC 960
ATACACCAAA AAGTCTTGAA GTATGCAGGC CGTCCTCCCT TTGAACATTC ACCCGTTAGA 1020
TTTTGTACTC AAAATGGAGA TTACATCAGA CTGGACTCCA GCTGGTCCAG CTTCGTGAAC 1080
CCATGGAGCC GGAAGGTTTC CTTCATCATC GGTCGACATA AAGTTCGAAC GAGTCCACTC 1140
AATGAGGATG TTTTTGCTAA CAGAATAAAA AAGACGAACA ATATTGACAA AGACATTACA 1200
GAATTACAAG AACAAATTCA CAAACTTCTC TTACAGCCAG TCCCCATGAG CGCCTCCAGT 1260
GGCTACGGGA GCCTGGGGAG CAGCGGGTCC CAGGAGCAGC AGGTCAGCGT GGCGTCCTCC 1320
AGTGAGTCCA GCGGGCACTG TGCAGAGGAT GCGCGGAAGG AGCCGCTGAC TTTGCAACAG 1380
GTCTATGCCA GCGTAAACAA AATTAAGAAC CTGGGCCAGC AGCTGTACAT TGAGTCGATG 1440
ACCAGATCAC CCAGCCAGCA AGCGACGGGG GTGCACGGGC CAGCTGGTAA GCAGAAGGCC 1500
TTTTCTTCCT TCCAGACATT GAAAAATAAT AGCACGTACA CTGAGTCTTA CGAGGATTTG 1560
AGAAAAGAGC AGCACAGCCC GTCCTATCAG CAGATTAACT GTATCGACAG TGTTATCAGA 1620
TACCTGAGGA GCTACAGCAT TCCGGCTTTG AAAAGAAAGT GCATATCCTG GACAAATACT 1680
ACGTCATCCT CGGAAGAAGA CAGGCACAAC CACAAGGCAG GTGCCGGCCA AGCCTCGCAA 1740
GCTGCAGACC CTCAGATCCC AGCTGCACCC ACATCGGAAC CACCACCTAA CGGACCGGCC 1800
CCAGACGCCA AGGGACGAGC TGCGCGGACG CCGTCCACGG CAGCCCCGAG CCTGGGCTCC 1860
GGCGTGAGCC AGTGCAGCTA CAGCAGCACC ATTGTGCACG CCCCGCCCCC AGAGTCAGCC 1920
AGGGACACCA CCCCAGCCTG TGAGGCCTGG CCGCCCAGCG CGCACCCAGC CCCACTGACC 1980
CCTGACGAGT TCAGACATGT GGGGCTCACC AAGGCCGTCC TGTCCGCCCA CACCCAGAAG 2040
GAGGAACAGA ACTACGTGGA TAAATTCCGG GAAAAGATCC TGTCACCACC CTACAGCTCC 2100
TACCTTCAGC AAGAAGGCAG AGGCAAAGCT AAATATTCAT ATGTTCAAGG GGAGTCCAGC 2160
TCCAAGCAGA GTCGCCCGGC TGCTGGCAGG AAGGGGAAGC ACAAGCGGAA GAAGCTGCTG 2220
CCCACAGACA GCTGTAGCGC GCGGGACGCC TGCTGTCCCC ACTTGACAGC TCGGGTCCAG 2280
GATGCACAGC CCTGGTGGCC TGCCGCCACC CCCGCCCCCG GCCTGTCGTT CCCAGCCGCG 2340
GTGCTGGTGC CCAGCCCGGC GCCCTGCCTC GTGCCGGCCG TGCCCGCGCT CCCGGCTGTG 2400
ANNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2460
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNTTT 2520
GTGACCGTTT TCTTGCCTGA CCCCCCCATC TGGCCTTTGG CTCCGTCGTG CACCCCGTTC 2580
CTGGGAGCGG CGGACTCCTC CATAACACCC TGCTTGGTGT CGGCAGCGGC CGCGAACCAG 2640
GAACCCCCGT TTTCGGTGAT CGACCGCAGC AGACCCAGGG GCCCAGAGGA GACCCGGAGT 2700
GAGGGGTGCC TGTCCGTCCC CTCGGGGACC AGCTCCCCGC TGCAGCTGAG CTTCCTCGGG 2760
GAGGTCGCGC CCGGGGCCCG GGAGCCCGCC GGCCCCCACA CACAGTGTCA GTGCGTTACA 2820
GGCAACGGTG GGAAGAAGAA CTGTGGTTTT ACTGCCAGCG ACCTGTCCGC AGCGTCACTT 2880
CACAAGGAGG CTCCGTGCAG ATTGGACTCT GCAGCAGCAG GAAGCAGTGA CAGCAGTGTA 2940
TACTTTACTA GCAGTGATGA TTCTCCTGAC ATCCCCCCAA ACGGGCAGCC GTCTCGAGAT 3000
GCCCTGGAAA CAGCAGCGTT TCCCGTCGCT GAAGAGTCCA TCTGGACAAT GATAAAACAA 3060
ACACCTGAGT GCATTCTGAT GACGTATCAG GTACCCGAGA GGGTTAAAGA AATTGTCCTG 3120
AGAGAAGACC TGGGCAAACT GGACAGCATG AGGCAGCAGC AGCCGCAGTT TTCCCCTGGA 3180
CAGAGAGCGG AGCTGGCTGC GGAGCATCCT TGGCTGCAGA GCCAGACAAT CCCTCCGGAA 3240
ATAGACACCC AGGGCTGTGT CACTTGCAAA CAGGAGGATT CCACTGGCGA GGCTGCGGAC 3300
CTCTATGGTC AGGTCCCAGC AGGGGACAGC AGCTGA 3336
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-CaE-021686Caenorhabditis elegans23.53 5.70e-16 83.96
CGD-GaG-020965Gallus gallus56.48 0.00e+00 705.7
CGD-MuM-021078Mus musculus (Mouse)64.8 0.00e+00 889.4
CGD-OvA-022195Ovis aries65.99 0.00e+00 933.7
CGD-RaN-021797Rattus norvegicus65.16 0.00e+00 898.7
Gene Ontology

GO:0005515--protein binding
GO:0045187--regulation of circadian sleep/wake cycle, sleep
GO:0007623--circadian rhythm
GO:0019900--kinase binding
GO:0031625--ubiquitin protein ligase binding
GO:0000122--negative regulation of transcription from RNA polymerase II promoter