CGDB Gene Information


Tag Content
CGDB ID CGD-HoS-021431
Uniprot Accession P56645; P56645; PER3_HUMAN; Q5H8X4; Q5H8X5; Q969K6; Q96S77; Q96S78; Q9C0J3; Q9NSP9; Q9UGU8
Protein Name Period circadian protein homolog 3
Gene Name PER3; GIG13
Ensembl Information ENST000003619
Genbank Protein ID NP_001276790.1; NP_001276791.1; NP_001276792.1; NP_001276793.1; NP_058515.1
Genbank Nucleotide ID NM_001289861.1; NM_001289862.1; NM_001289863.1; NM_001289864.1; NM_016831.2
EMBL (Genbank) ID BAB63250.1
Organism Homo sapiens (Human)
NCBI Taxa ID 9606
Circadian Information
Evidence Phase Amplitude
(FOLD)
Sentence Tissue/Cell Data type PMID
Peak Trough External
condition
High-throughput CT 19 CT 10 LL2 1.50 Insufficient sleep affects the human blood transcriptome, disrupts its circadian regulation, and intensifies the effects of acute total sleep deprivation. blood Microarray [1]
Small-scale CT 16 CT 4 DD2 2.70 Robust circadian rhythms of Rev-Erbα is similar with Per3 in human HaCaT keratinocytes. human HaCaT keratinocytes Small-scale [1]
Small-scale ZT 4 ZT 21 LD 3.50 The expression of Per3 is cyclic in human HaCaT keratinocytes. human HaCaT keratinocytes Small-scale [1]
Small-scale ZT 15 ZT 3 LD 2.00 PER1, PER3, and REV-ERBα exhibit circadian expression in the constant routine study samples. blood Small-scale [1]
DescriptionOriginally described as a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in gene expression, which are translated into rhythms in metabolism and behavior. It is derived from the Latin roots ''circa'' (about) and ''diem'' (day) and acts as an important regulator of a wide array of physiological functions including metabolism, sleep, body temperature, blood pressure, endocrine, immune, cardiovascular, and renal function. Consists of two major components: the central clock, residing in the suprachiasmatic nucleus (SCN) of the brain, and the peripheral clocks that are present in nearly every tissue and organ system. Both the central and peripheral clocks can be reset by environmental cues, also known as Zeitgebers (German for ''timegivers''). The predominant Zeitgeber for the central clock is light, which is sensed by retina and signals d(View all)
PTM Sites
Count: 25
(View all)
PositionPeptideTypePMID
1048 ATVLSTGSPPSESPS phosphorylation 22115753; 16381945; 23193290; 25173241; 22135298; 31083149; 23917254; 24667141
1051 LSTGSPPSESPSRTG phosphorylation 23186163
1053 TGSPPSESPSRTGSA phosphorylation 25173241; 22135298; 31083149; 23917254
1072 SDSSIYLTSSVYSSK phosphorylation 23130858; 22135298; 23130849
1073 DSSIYLTSSVYSSKI phosphorylation 23130849; 22135298; 23130858
1119 PERILMTYQVPERVK phosphorylation 21403953; 21447384; 16381945; 23193290; 3697367; 22135298
388 LNEDVFATKIKKMND phosphorylation 25304597; 22135298
408 TELQEQIYKLLLQPV phosphorylation 464815; 22135298
463 QMTLQQVYASVNKIK phosphorylation 3416794; 22135298; 26074081
465 TLQQVYASVNKIKNL phosphorylation 26074081
480 GQQLYIESMTKSSFK phosphorylation 19413330; 16381945; 23193290; 18988627; 23130851; 22135298; 36277248
482 QLYIESMTKSSFKPV phosphorylation 19413330; 16381945; 23193290; 18988627; 23130851; 22135298; 36277248
622 ILSTAMLSLGSGISQ phosphorylation 11865049; 16381945; 23193290; 18988627
625 TAMLSLGSGISQCGY phosphorylation 11865049; 16381945; 23193290; 18988627
628 LSLGSGISQCGYSST phosphorylation 11865049; 16381945; 23193290; 18988627
633 GISQCGYSSTIVHVP phosphorylation 11865049; 16381945; 23193290; 18988627
634 ISQCGYSSTIVHVPP phosphorylation 11865049; 16381945; 23193290; 18988627
635 SQCGYSSTIVHVPPP phosphorylation 11865049; 16381945; 23193290; 18988627
718 SRSKAKYSYFQGDST phosphorylation 34605600; 22135298
753 EPPDSSSSNTGSGPR phosphorylation 23130854; 22135298; 23130861; 23130856
755 PDSSSSNTGSGPRRG phosphorylation 23130854; 22135298; 23130861; 23130856
757 SSSSNTGSGPRRGAH phosphorylation 23130854; 22135298; 23130861; 23130856
919 EGHPFITSRSSSPLQ phosphorylation 31085211; 22135298; 23917254; 23186163
923 FITSRSSSPLQLNLL phosphorylation 23917254
994 ASALSTGSPPMKNPS phosphorylation 31087813; 22135298; 23917254
Protein Sequence
(Fasta)
MPRGEAPGPG RRGAKDEALG EESGERWSPE FHLQRKLADS SHSEQQDRNR VSEELIMVVQ 60
EMKKYFPSER RNKPSTLDAL NYALRCVHSV QANSEFFQIL SQNGAPQADV SMYSLEELAT 120
IASEHTSKNT DTFVAVFSFL SGRLVHISEQ AALILNRKKD VLASSHFVDL LAPQDMRVFY 180
AHTARAQLPF WNNWTQRAAR YECAPVKPFF CRIRGGEDRK QEKCHSPFRI IPYLIHVHHP 240
AQPELESEPC CLTVVEKIHS GYEAPRIPVN KRIFTTTHTP GCVFLEVDEK AVPLLGYLPQ 300
DLIGTSILSY LHPEDRSLMV AIHQKVLKYA GHPPFEHSPI RFCTQNGDYI ILDSSWSSFV 360
NPWSRKISFI IGRHKVRTSP LNEDVFATKI KKMNDNDKDI TELQEQIYKL LLQPVHVSVS 420
SGYGSLGSSG SQEQLVSIAS SSEASGHRVE ETKAEQMTLQ QVYASVNKIK NLGQQLYIES 480
MTKSSFKPVT GTRTEPNGGG ECKTFTSFHQ TLKNNSVYTE PCEDLRNDEH SPSYQQINCI 540
DSVIRYLKSY NIPALKRKCI SCTNTTSSSS EEDKQNHKAD DVQALQAGLQ IPAIPKSEMP 600
TNGRSIDTGG GAPQILSTAM LSLGSGISQC GYSSTIVHVP PPETARDATL FCEPWTLNMQ 660
PAPLTSEEFK HVGLTAAVLS AHTQKEEQNY VDKFREKILS SPYSSYLQQE SRSKAKYSYF 720
QGDSTSKQTR SAGCRKGKHK RKKLPEPPDS SSSNTGSGPR RGAHQNAQPC CPSAASSPHT 780
SSPTFPPAAM VPSQAPYLVP AFPLPAATSP GREYAAPGTA PEGLHGLPLS EGLQPYPAFP 840
FPYLDTFMTV FLPDPPVCPL LSPSFLPCPF LGATASSAIS PSMSSAMSPT LDPPPSVTSQ 900
RREEEKWEAQ SEGHPFITSR SSSPLQLNLL QEEMPRPSES PDQMRRNTCP QTEYCVTGNN 960
GSESSPATTG ALSTGSPPRE NPSHPTASAL STGSPPMKNP SHPTASALST GSPPMKNPSH 1020
PTASTLSMGL PPSRTPSHPT ATVLSTGSPP SESPSRTGSA ASGSSDSSIY LTSSVYSSKI 1080
SQNGQQSQDV QKKETFPNVA EEPIWRMIRQ TPERILMTYQ VPERVKEVVL KEDLEKLESM 1140
RQQQPQFSHG QKEELAKVYN WIQSQTVTQE IDIQACVTCE NEDSADGAAT SCGQVLVEDS 1200
C 1201
Nucleotide Sequence
(Fasta)
TGAACAGCAA GATCGAAACA GAGTTTCTGA AGAACTTATC ATGGTTGTCC AAGAAATGAA 60
AAAATATTTC CCCTCGGAGA GACGCAATAA ACCAAGCACT CTAGATGCCC TCAACTATGC 120
TCTCCGCTGT GTCCACAGCG TTCAAG 146
Sequence Source Uniprot/ENA
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-AiM-028497Ailuropoda melanoleuca64.75 3.00e-150 529.6
CGD-AnP-057114Anas platyrhynchos48.88 0.00e+00 703.4
CGD-CaJ-041907Callithrix jacchus78.47 0.00e+00 1796.6
CGD-CaP-050028Cavia porcellus51.13 0.00e+00 978
CGD-DaR-072762Danio rerio38.18 0.00e+00 686.4
CGD-DaN-060659Dasypus novemcinctus69.91 0.00e+00 894
CGD-FiA-032827Ficedula albicollis50.53 0.00e+00 728
CGD-GaG-020965Gallus gallus50.9 0.00e+00 721.1
CGD-IcT-051943Ictidomys tridecemlineatus57.34 0.00e+00 1232.6
CGD-MoD-067747Monodelphis domestica57.71 0.00e+00 991.5
CGD-MyL-055612Myotis lucifugus57.41 0.00e+00 960.3
CGD-OrN-041249Oreochromis niloticus47.22 2.00e-164 578.9
CGD-OrL-069692Oryzias latipes43.06 3.00e-174 610.9
CGD-PaT-063745Pan troglodytes88.52 0.00e+00 2091.2
CGD-PaA-041784Papio anubis80.89 0.00e+00 1875.9
CGD-TaG-047964Taeniopygia guttata52.17 0.00e+00 742.3
CGD-TaR-034200Takifugu rubripes43.21 5.00e-180 630.2
CGD-XeT-062261Xenopus tropicalis49.76 0.00e+00 727.6
CGD-XiM-036627Xiphophorus maculatus45.78 1.00e-163 575.9
Keyword

KW-0025--Alternative splicing
KW-0090--Biological rhythms
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-0621--Polymorphism
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0832--Ubl conjugation

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0032922--P:circadian regulation of gene expression
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045187--P:regulation of circadian sleep/wake cycle, sleep
GO:0006351--P:transcription, DNA-templated

Interpro

IPR000014--PAS
IPR013655--PAS_fold_3
IPR015524--Per_circ_prot_3
IPR022728--Period_circadian-like_C

PROSITE

PS50112--PAS

Pfam

PF08447--PAS_3
PF12114--Period_C

SMART

SM00091--PAS