CGDB Gene Information

Tag Content
CGDB ID CGD-AnP-031610
Ensembl Accession ENSAPLP00000003962.1
Protein Name PER2
Ensembl Information ENSAPLG00000004326; ENSAPLT00000004569
Organism Anas platyrhynchos
NCBI Taxa ID 8839
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 12 ZT 0 LD >10 Predicted from orthologs Q65ZG8
ZT 6 ZT 18 LD 5 skeletal muscle Predicted from orthologs F6ZZH0
ZT 21 ZT 9 LD 6 duodenum Predicted from orthologs Q8QGQ8
ZT 2 ZT 18 LD 3.17 embryos Predicted from orthologs Q8QGQ8
ZT 6 ZT 18 LD 8 embryos Predicted from orthologs Q8QGQ8
CT 12 CT 0 DD1 3 granulosa cells Predicted from orthologs Q8QGQ8
ZT 3 ZT 18 LD 84.29 pineal glands Predicted from orthologs Q8QGQ8
ZT 23 ZT 11 LD 2.25 spleen Predicted from orthologs Q8QGQ8
CT 4 CT 12 DD2 27 aortic smooth muscle cells Predicted from orthologs O15055
ZT 4 ZT 21 LD 5 human HaCaT keratinocytes Predicted from orthologs O15055
ZT 1 ZT 19 LD 2.67 human hair follicle cells Predicted from orthologs O15055
CT 12 CT 0 LL1 3.43 oral mucosa Predicted from orthologs O15055
CT 3 CT 15 DD2 5 U2OS cells Predicted from orthologs O15055
CT 6 CT 18 DD1 4 SCN Predicted from orthologs O54943
CT 9 CT 3 DD1 3 eye Predicted from orthologs O54943
ZT 19 ZT 7 LD 2.5 amygdala Predicted from orthologs O54943
ZT 12 ZT 4 LD 2 bone Predicted from orthologs O54943
ZT 13 ZT 5 LD 2.4 bone marrow Predicted from orthologs O54943
ZT 18 ZT 6 LD 1.89 brain Predicted from orthologs O54943
ZT 15 ZT 23 LD 3 cortex Predicted from orthologs O54943
ZT 13 ZT 2 LD 10 heart Predicted from orthologs O54943
ZT 13 ZT 1 LD 2.5 hippocampus Predicted from orthologs O54943
ZT 16 ZT 0 LD 25 jejunum Predicted from orthologs O54943
ZT 15 ZT 23 LD 6 kidney Predicted from orthologs O54943
CT 15 CT 3 DD1 4 liver Predicted from orthologs O54943
ZT 16 ZT 4 LD 7 liver Predicted from orthologs O54943
CT 18 CT 6 DD2 10 MEFs Predicted from orthologs O54943
ZT 17 ZT 1 LD 6 megakaryocytes Predicted from orthologs O54943
ZT 18 ZT 6 LD 3 n primary visualcortex (V1) Predicted from orthologs O54943
CT 0 CT 12 DD2 10 NIH-3T3 cells Predicted from orthologs O54943
CT 12 CT 0 DD3 4.79 ovary Predicted from orthologs O54943
ZT 12 ZT 4 LD 5 pituitary gland Predicted from orthologs O54943
CT 12 CT 20 DD3 5 retina Predicted from orthologs O54943
ZT 12 ZT 16 LD 5 retina Predicted from orthologs O54943
CT 12 CT 20 DD3 6 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
ZT 0 ZT 16 LD 2 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
CT 9 CT 21 DD1 6 SCN Predicted from orthologs O54943
CT 8 CT 16 DD1 20 SCN Predicted from orthologs O54943
CT 15 CT 3 DD1 3 skeletal muscle Predicted from orthologs O54943
CT 14 CT 2 DD3 12 suprachiasmatic nucleus (SCN) Predicted from orthologs O54943
ZT 0 ZT 12 LD 2 muscle Predicted from orthologs W5QC67
ZT 4 ZT 0 LD 5 SCN Predicted from orthologs W5QC67
ZT 16 ZT 4 LD 9 abdominal adipose tissue Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 anterior cingulate Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 2.05 area postrema Predicted from orthologs Q9Z301
ZT 18 ZT 2 LD 6.38 AV3V Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 14 basolateral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 10 ZT 6 LD 2 caudal ventrolateral medulla Predicted from orthologs Q9Z301
CT 12 CT 8 DD17 4.35 colon Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 3.29 dorsal vagal motor nucleus Predicted from orthologs Q9Z301
ZT 2 ZT 14 LD 1.8 dorsomedial nucleus Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 5.5 entral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 5.7 heart Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 15 hippocampus Predicted from orthologs Q9Z301
ZT 16 ZT 3 LD 57 intestinal jejunal mucosa Predicted from orthologs Q9Z301
CT 16 CT 4 DD17 5 liver Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 8.5 liver Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q9Z301
ZT 0 ZT 12 LD 7 nucleus accumbens shell Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.07 nucleus ambiguus Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.63 paraventricular nucleus Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 4 prefrontal cortex Predicted from orthologs Q9Z301
ZT 12 ZT 8 LD 2.5 PVN Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 rostral agranular insula Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 3.92 SCN Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
Descriptionperiod circadian clock 2 [Source:HGNC Symbol;Acc:HGNC:8846](View all)
Protein Sequence
(Fasta)		 MDSIKFRGFY SSTEEQNPEH ERISSLFSLK EQQKMSEYSG LASSHNQMIA EDSGIQTKPE 60
HSHEVLQEDI EMSSGSSGND FSGNETNENY SSGHDSHGHE SDENGKDSAM LMESSDCHKS 120
SSSNAFSLMI ANSEHNQSSS GCSSEQSTKA KTQKELLKTL QELKAHLPSE KRVKGKSSIL 180
TTLKYALKSI KQVKANEEYY QLLMINESQP SGLNVSSYTV EEVETITSEY IMKNADMFAV 240
AVSLITGKIV YISDQAASIL RCKRGYFKNA KFVEFLAPQD VSVFYTSTTP YRLPSWNICN 300
RAESSTQDCM EEKSFFCRIS AGKERENEIC YHPFRMTPYL IKVQDPEVAE DQLCCVLLAE 360
KVHSGYEAPR IPPDKRIFTT THTPTCLFQD VDERAVPLLG YLPQDLIGTP VLVHLHPNDR 420
PLMLAIHKKI LQYGGQPFDY SPIRFCTRNG DYITMDTSWS SFINPWSRKV SFIIGRHKVR 480
TGPLNEDVFA APNYTEDRIL HPSVQEITEQ IYRLLLQPVH NSGSSGYGSL GSNGSHEHLM 540
SVASSSDSTG NNNEDTQKDK TIGQDARKVK NKGQRIFTDN KAKLEHKREP FAEKQSGPGA 600
QVKDAIGKDT AVTAAPKNVA TEELAWKEQP VYSYQQISCL DSVIRYLESC NVPGTAKRKC 660
EPSSSVNSGV HEQKAAVNAI QPLGGPTVLK ASGKSSSPPV VGAHLTSLAL PGKPESVVSL 720
TSQCSYSSTI VHVGDKKTQP ELEMIEDGPS GAELLDSQLT APPSSSVHVN QEKESFKKLG 780
LTKEVLAVHT QKEEQSFLNK FKEVKRFNIF QSHCNYYLQD KPKGRPAERG GRGQRNGTSG 840
MDQPWKKSGK NRKSKRIKPQ ESSDSTTSGT KFPHRFPLQG LNTTAWSPSD TSQASYSAMS 900
FPTVMPAYPL PVFPATGTVP PAPETSLSGF NQLPDSGNTC PMQPSQFSAP LMTPVVALVL 960
PNYVYPEMNS SLPQTLYHSQ ANFPTPSPFS SQTVFPAQTP FSTPSPFPQQ AFFPTQPFHY 1020
NAPAESEKVP ATETRNEPSR SCTPQSVGAQ DQASPPLFQS RCSSPLNLLQ LEETTKTVES 1080
GAPAGFHGAL NEEGAIGSKI VTTDNCSGKG SLPAESPMDA QNSDALSMSS VLLDILLQED 1140
ACSGTGSASS GSGVSAAAES LGSGSNGCDM SGSRTGSSET SHTSKYFGSI DSSENHHKTK 1200
MKAEMEESEH FIKYVLQDPI WLLMANTDDT VMMTYQIPSR DLETVLKEDK QKLKQMQKLQ 1260
PKFTEEQKRE LIEVHPWIQQ GGLPKTVANS ECIFCEDNIQ SNFYTSYDEE IHEMDLNEMI 1320
EDSGENNLVS LSQVSEEQT 1339
Nucleotide Sequence
(Fasta)		 ATGGACAGTA TCAAGTTCAG GGGGTTCTAC TCTAGCACTG AGGAGCAGAA CCCTGAGCAT 60
GAACGCATTT CTTCATTGTT CTCTTTAAAA GAGCAACAGA AAATGAGTGA GTATTCTGGA 120
CTTGCAAGTA GTCATAACCA GATGATTGCT GAAGATTCAG GAATTCAGAC AAAGCCTGAA 180
CACTCTCATG AAGTTCTTCA GGAAGATATT GAGATGAGCA GTGGATCCAG TGGAAATGAC 240
TTCAGTGGAA ATGAAACAAA TGAAAACTAC TCCAGCGGGC ATGATTCTCA TGGCCATGAA 300
TCTGATGAAA ATGGGAAAGA TTCAGCAATG CTCATGGAAT CTTCAGACTG TCATAAAAGC 360
TCAAGCTCAA ATGCATTTAG TCTGATGATC GCAAACTCTG AACACAATCA GTCTAGCAGC 420
GGATGCAGTA GCGAGCAGTC CACTAAAGCC AAAACACAAA AGGAGTTGTT GAAAACTTTA 480
CAAGAGCTGA AAGCTCACCT TCCTTCAGAA AAGCGAGTTA AAGGCAAATC TAGTATCCTA 540
ACAACGTTGA AATATGCCCT TAAAAGCATT AAACAAGTTA AAGCCAATGA GGAGTATTAC 600
CAATTGTTGA TGATTAATGA ATCCCAGCCT TCTGGACTCA ATGTGTCATC CTACACGGTG 660
GAAGAAGTTG AAACTATAAC CTCAGAATAC ATCATGAAAA ATGCAGATAT GTTTGCTGTA 720
GCTGTTTCTC TGATTACTGG GAAAATTGTC TACATCTCTG ATCAAGCTGC TTCTATTCTT 780
CGCTGTAAGA GAGGTTATTT TAAAAATGCC AAATTTGTGG AATTCCTGGC ACCTCAGGAT 840
GTCAGTGTTT TCTATACTTC TACTACCCCA TACAGATTGC CATCTTGGAA TATTTGCAAT 900
AGAGCTGAGT CTTCCACCCA GGATTGCATG GAAGAGAAAT CTTTTTTCTG TCGCATCAGT 960
GCAGGGAAGG AGCGTGAAAA TGAGATCTGC TATCACCCGT TTCGGATGAC TCCTTACCTT 1020
ATCAAAGTAC AAGATCCGGA AGTAGCAGAA GACCAGCTTT GCTGTGTGTT GCTTGCAGAA 1080
AAAGTGCATT CTGGTTATGA AGCACCCAGA ATTCCTCCTG ACAAAAGAAT TTTTACAACT 1140
ACACACACAC CAACCTGTTT GTTCCAGGAT GTAGATGAGA GAGCGGTACC TCTGTTGGGA 1200
TACCTACCTC AGGACTTAAT AGGAACACCA GTCTTGGTGC ATCTTCACCC AAATGACAGG 1260
CCCTTAATGC TAGCAATTCA CAAGAAAATT CTTCAGTACG GAGGACAGCC TTTTGACTAT 1320
TCACCAATCA GGTTTTGCAC TAGAAATGGA GATTATATAA CCATGGACAC TAGCTGGTCC 1380
AGTTTCATCA ATCCTTGGAG TCGAAAAGTT TCGTTTATCA TTGGAAGACA CAAAGTTAGG 1440
ACGGGTCCCT TAAATGAAGA TGTCTTTGCT GCTCCCAACT ATACAGAGGA CAGAATCCTT 1500
CACCCTAGTG TTCAGGAAAT CACAGAGCAA ATATATCGGC TGCTATTGCA GCCTGTACAC 1560
AACAGCGGAT CCAGTGGCTA TGGAAGCCTA GGTAGCAATG GCTCACATGA ACACTTAATG 1620
AGTGTGGCAT CCTCCAGTGA CAGCACAGGA AATAATAATG AAGACACTCA AAAGGATAAA 1680
ACAATTGGTC AAGATGCCAG GAAGGTCAAA AATAAAGGAC AACGTATTTT CACTGACAAT 1740
AAAGCAAAAC TGGAGCATAA GAGAGAGCCT TTTGCAGAAA AACAAAGTGG TCCTGGTGCT 1800
CAGGTGAAAG ATGCAATAGG AAAGGATACT GCGGTCACAG CTGCTCCTAA AAATGTGGCT 1860
ACTGAAGAAT TGGCTTGGAA AGAACAACCT GTGTATTCTT ATCAACAGAT TAGCTGTTTG 1920
GACAGTGTCA TCAGATACTT GGAGAGTTGT AATGTGCCTG GTACAGCAAA AAGAAAATGT 1980
GAACCTTCTT CAAGTGTGAA TTCTGGTGTT CATGAACAAA AAGCAGCTGT TAATGCTATA 2040
CAACCCTTGG GAGGCCCTAC TGTGTTGAAG GCATCTGGCA AATCAAGTAG TCCCCCAGTA 2100
GTTGGTGCTC ACTTAACTTC TTTGGCTTTA CCTGGCAAGC CTGAAAGCGT TGTATCACTC 2160
ACAAGTCAGT GCAGCTACAG TAGCACCATT GTTCATGTTG GAGACAAGAA AACACAACCT 2220
GAATTAGAAA TGATAGAAGA TGGTCCGAGT GGAGCAGAAC TCTTAGATAG CCAACTTACT 2280
GCACCTCCAT CCAGCTCTGT ACATGTAAAT CAGGAAAAGG AGTCATTTAA AAAACTGGGA 2340
CTTACAAAGG AAGTCCTTGC AGTGCATACA CAAAAAGAAG AGCAGAGCTT TTTGAATAAG 2400
TTCAAAGAAG TAAAGAGATT TAATATTTTT CAGTCCCACT GCAATTACTA CTTACAAGAT 2460
AAACCCAAAG GACGGCCTGC TGAACGTGGT GGCCGTGGAC AAAGAAATGG CACTTCTGGA 2520
ATGGATCAGC CTTGGAAGAA AAGTGGAAAA AACAGGAAGT CAAAACGCAT TAAACCACAG 2580
GAATCTTCAG ACAGTACAAC TTCTGGAACT AAATTTCCCC ATCGGTTTCC TCTTCAAGGC 2640
TTAAATACTA CTGCTTGGTC ACCATCAGAC ACTTCACAAG CAAGCTATTC AGCGATGTCT 2700
TTTCCCACCG TTATGCCTGC ATATCCCCTT CCCGTTTTTC CAGCAACAGG GACTGTGCCA 2760
CCAGCTCCTG AGACTTCGCT CTCTGGTTTT AATCAGTTGC CAGACTCTGG AAATACTTGC 2820
CCTATGCAAC CATCCCAGTT CTCTGCCCCC CTCATGACAC CCGTTGTAGC TCTTGTGCTC 2880
CCCAACTACG TCTACCCAGA GATGAACAGT AGCTTACCTC AAACGCTTTA CCACAGCCAA 2940
GCCAACTTTC CTACCCCATC TCCTTTCTCC TCACAGACAG TATTTCCAGC ACAGACACCA 3000
TTCAGTACTC CCAGCCCTTT CCCGCAGCAG GCGTTTTTTC CAACACAACC ATTCCATTAC 3060
AATGCACCAG CAGAAAGTGA AAAGGTGCCT GCCACAGAGA CACGAAATGA GCCATCCCGT 3120
TCCTGCACTC CACAGTCAGT GGGTGCTCAA GACCAGGCTT CTCCACCTTT ATTCCAGTCA 3180
AGGTGTAGTT CTCCTCTGAA TCTTCTGCAA TTAGAGGAAA CCACAAAAAC TGTGGAAAGT 3240
GGAGCTCCTG CGGGTTTTCA TGGAGCTTTA AATGAGGAAG GAGCCATAGG CAGCAAAATC 3300
GTGACAACTG ATAACTGCAG TGGAAAGGGA TCCCTACCAG CTGAATCTCC AATGGATGCT 3360
CAAAATAGTG ATGCACTCTC CATGTCCAGT GTCCTGCTTG ACATTTTACT TCAAGAAGAC 3420
GCATGTTCAG GCACTGGCTC AGCTTCGTCA GGGAGCGGTG TATCTGCAGC TGCTGAATCT 3480
CTAGGGTCTG GTTCTAATGG CTGTGACATG TCAGGGAGCA GAACAGGTAG TAGTGAAACT 3540
AGTCATACCA GCAAATACTT CGGGAGTATT GACTCTTCAG AAAATCATCA TAAAACAAAA 3600
ATGAAGGCAG AAATGGAAGA AAGCGAGCAC TTCATTAAGT ATGTCCTTCA GGATCCTATA 3660
TGGCTTTTGA TGGCGAACAC AGATGACACT GTTATGATGA CTTACCAGAT ACCTTCTCGA 3720
GATTTGGAAA CAGTCTTAAA AGAAGATAAG CAGAAATTAA AGCAAATGCA GAAACTACAG 3780
CCAAAATTTA CAGAAGAACA GAAAAGAGAG CTCATTGAAG TTCATCCATG GATCCAACAA 3840
GGTGGACTGC CAAAAACTGT TGCTAATTCT GAATGTATTT TTTGTGAGGA CAATATACAG 3900
AGCAACTTTT ATACATCATA TGATGAAGAA ATCCATGAAA TGGACCTTAA TGAAATGATT 3960
GAAGACAGTG GGGAAAACAA CTTGGTTTCT CTGAGTCAAG TCAGTGAAGA ACAAACATAG 4020
CCTTTGAGCC TGTTGCTTTT AAAGCTGCTT CAAAATTATG GTGATGATCC GTAAAAGTTT 4080
TAATCTTGTT TCCAGCAAGA TGAATCTGGT TCGTAAAACA AATGTGTTTT TCTTGCTCTA 4140
AGAGTCATTT GTGAAAGAAT CTCTTTTTAA ATGGTGGCAA TCTCTTCCCA GTAAGGACAT 4200
TGTTGAAGAT GGTATAGCTT TTCTTTAAAA AAGACTCATA TTTTGCACTT ACATGCCTCA 4260
AGTATTTCTT TATAAAAGCT TTCATTGATG CCTACTGAGT GGGTCAATGA GTACTGAAAA 4320
TCCCGTTGCG AACATAACAG TTCTTCAAAT CTCCTTTGGA TAATGATTCA GCATTATACA 4380
TTGTTCTAGG CATTTTGCTT AGTGGCTCTT TAGCATTGCT CTTAATATCT GAAGTGGTCC 4440
AGCATAGTAG AAGAAATAAC CTGCCAGAAA ATCAATTCAC ACTTG 4485
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-CaE-021686Caenorhabditis elegans23.29 1.50e-18 92.82
CGD-EqC-020992Equus caballus52.89 0.00e+00 1177.9
CGD-GaG-021834Gallus gallus82.17 0.00e+00 2168.3
CGD-HoS-021036Homo sapiens (Human)53.22 0.00e+00 1219.9
CGD-MuM-021066Mus musculus (Mouse)51 0.00e+00 1160.2
CGD-OvA-022197Ovis aries41.45 0.00e+00 818.1
CGD-RaN-022186Rattus norvegicus49.96 0.00e+00 1151.7
Gene Ontology

GO:0005737--cytoplasm
GO:0005634--nucleus
GO:0005515--protein binding
GO:0005654--nucleoplasm