CGDB Gene Information

Tag Content
CGDB ID CGD-IcT-068082
Ensembl Accession ENSSTOP00000007674.2
Protein Name PER2
Ensembl Information ENSSTOG00000008549; ENSSTOT00000008561
Organism Ictidomys tridecemlineatus
NCBI Taxa ID 43179
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 12 ZT 0 LD >10 Predicted from orthologs Q65ZG8
ZT 6 ZT 18 LD 5 skeletal muscle Predicted from orthologs F6ZZH0
ZT 21 ZT 9 LD 6 duodenum Predicted from orthologs Q8QGQ8
ZT 2 ZT 18 LD 3.17 embryos Predicted from orthologs Q8QGQ8
ZT 6 ZT 18 LD 8 embryos Predicted from orthologs Q8QGQ8
CT 12 CT 0 DD1 3 granulosa cells Predicted from orthologs Q8QGQ8
ZT 3 ZT 18 LD 84.29 pineal glands Predicted from orthologs Q8QGQ8
ZT 23 ZT 11 LD 2.25 spleen Predicted from orthologs Q8QGQ8
CT 4 CT 12 DD2 27 aortic smooth muscle cells Predicted from orthologs O15055
ZT 4 ZT 21 LD 5 human HaCaT keratinocytes Predicted from orthologs O15055
ZT 1 ZT 19 LD 2.67 human hair follicle cells Predicted from orthologs O15055
CT 12 CT 0 LL1 3.43 oral mucosa Predicted from orthologs O15055
CT 3 CT 15 DD2 5 U2OS cells Predicted from orthologs O15055
CT 6 CT 18 DD1 4 SCN Predicted from orthologs O54943
CT 9 CT 3 DD1 3 eye Predicted from orthologs O54943
ZT 19 ZT 7 LD 2.5 amygdala Predicted from orthologs O54943
ZT 12 ZT 4 LD 2 bone Predicted from orthologs O54943
ZT 13 ZT 5 LD 2.4 bone marrow Predicted from orthologs O54943
ZT 18 ZT 6 LD 1.89 brain Predicted from orthologs O54943
ZT 15 ZT 23 LD 3 cortex Predicted from orthologs O54943
ZT 13 ZT 2 LD 10 heart Predicted from orthologs O54943
ZT 13 ZT 1 LD 2.5 hippocampus Predicted from orthologs O54943
ZT 16 ZT 0 LD 25 jejunum Predicted from orthologs O54943
ZT 15 ZT 23 LD 6 kidney Predicted from orthologs O54943
CT 15 CT 3 DD1 4 liver Predicted from orthologs O54943
ZT 16 ZT 4 LD 7 liver Predicted from orthologs O54943
CT 18 CT 6 DD2 10 MEFs Predicted from orthologs O54943
ZT 17 ZT 1 LD 6 megakaryocytes Predicted from orthologs O54943
ZT 18 ZT 6 LD 3 n primary visualcortex (V1) Predicted from orthologs O54943
CT 0 CT 12 DD2 10 NIH-3T3 cells Predicted from orthologs O54943
CT 12 CT 0 DD3 4.79 ovary Predicted from orthologs O54943
ZT 12 ZT 4 LD 5 pituitary gland Predicted from orthologs O54943
CT 12 CT 20 DD3 5 retina Predicted from orthologs O54943
ZT 12 ZT 16 LD 5 retina Predicted from orthologs O54943
CT 12 CT 20 DD3 6 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
ZT 0 ZT 16 LD 2 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
CT 9 CT 21 DD1 6 SCN Predicted from orthologs O54943
CT 8 CT 16 DD1 20 SCN Predicted from orthologs O54943
CT 15 CT 3 DD1 3 skeletal muscle Predicted from orthologs O54943
CT 14 CT 2 DD3 12 suprachiasmatic nucleus (SCN) Predicted from orthologs O54943
ZT 16 ZT 4 LD 9 abdominal adipose tissue Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 anterior cingulate Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 2.05 area postrema Predicted from orthologs Q9Z301
ZT 18 ZT 2 LD 6.38 AV3V Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 14 basolateral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 10 ZT 6 LD 2 caudal ventrolateral medulla Predicted from orthologs Q9Z301
CT 12 CT 8 DD17 4.35 colon Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 3.29 dorsal vagal motor nucleus Predicted from orthologs Q9Z301
ZT 2 ZT 14 LD 1.8 dorsomedial nucleus Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 5.5 entral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 5.7 heart Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 15 hippocampus Predicted from orthologs Q9Z301
ZT 16 ZT 3 LD 57 intestinal jejunal mucosa Predicted from orthologs Q9Z301
CT 16 CT 4 DD17 5 liver Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 8.5 liver Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q9Z301
ZT 0 ZT 12 LD 7 nucleus accumbens shell Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.07 nucleus ambiguus Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.63 paraventricular nucleus Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 4 prefrontal cortex Predicted from orthologs Q9Z301
ZT 12 ZT 8 LD 2.5 PVN Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 rostral agranular insula Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 3.92 SCN Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
Descriptionperiod circadian clock 2 [Source:HGNC Symbol;Acc:HGNC:8846](View all)
Protein Sequence
(Fasta)		 MNGFAEFPPS TGDPTKELMD AQPSQALLQE DVDMSSGSSG NENCSMGRDS QGSDCEDNGK 60
ELGMLVETAN TRESPGAFGL AVTEPQGSAP TLPCPSEQSA KADAHRELVR TLRELKVHLP 120
ADKQAKGKAS TLATLKYALR SVKQVKANEE YFQLLMSSDS QPCCAGVPSY TVAQVEGATS 180
EYVLKNADMF AVAVSLVTGK ILYISDQVVS IFRCKREAFG DAQFVAFLAP QDVSVFHSCT 240
TPCKLPPWSM CGGVDSFTQE CMEEKSFFCR VGVGENHENE IHYQPFRMTP YLAQVQERPG 300
TESQLCCLLL AERVHSGYEA PRIPPEKRIF TTTHTPNCLF QDVDERAVPL LGYLPQDLME 360
TPVLLQLHPS DRPLMLAIHK KILQSGGQPF DYSPMRFRAR NGEYVTLDTS WSSFINPWSR 420
KISFIIGRHR VRVGPLNEDV FAAPPCAEEK ALPPNLQELA AQIHRLLLQP VPHSGSSGYG 480
SLGSNGSHEH LMSQTSSSDS NGHEESRQRR AEICKNGNDK TKTKTHFSHE SGEQKKKSIT 540
EMQSSPPAQG KDVPATEEDS LGASRPRASV PEELACKDQP TCSYQQISCL DSVIRYLESC 600
SEAATLKRKC ASPANIPSPK ATASPGLHAG GAASPAKVSS RREVSARLSS LTLPGKAESV 660
VSLTSQCSYS STIVHVGDKK PQPESEMVED AASGPESLDC LPHSLGQEKG PLQNLGLTKE 720
VLAAHTQREE QSFLQKFRGA RRLGVLPAHC HYYSRERSGG PSSESTAPGL RSTSGIDSSW 780
KKTGKNRKLK SRRARPRGPS QSAGPGGLEP HRRPLASLSA TAWSPSDTSQ SSCPALAFPA 840
AVPTYPLPMF PAPGTMVSPP AAPHTSFAVP ALPVGPQHEF AVQPLPFSAP VAPLVALMLP 900
TCPFPPVAPN LPQAFFPGHP RLPSGVTPGS QPEAPQQTPL PRRPCPRPAT PPSATVAAGR 960
ASPPLFQSRG SSPLQLNLLQ MEEPPEGSAA ATATLGHPGT AAARPDCTPG APRDQQAKAP 1020
PTREEPSDAQ ESDALSVSSD LLNLLLSEDL CSATGSALSG SGASATSGSL GSSSPGCSAS 1080
HSGAGSSDTS RTSKYFGSID SSENHHKAEM DRSKGQSEHF IKYVLQDPIW LLMADTDDSI 1140
MMTYQLPSRD LESVLKEDRE KLKLLQRSQP WFTEGQRQEL REVHPWVQTG GLPAAINVAE 1200
CVYCESEEKG SICVPYEGDI PSLGLSDASD TKEEESGQAP RPRAGEQT 1248
Nucleotide Sequence
(Fasta)		 ATGAATGGAT TTGCGGAATT TCCCCCCAGC ACCGGTGACC CCACCAAGGA GCTCATGGAC 60
GCCCAGCCAA GCCAGGCCTT GCTCCAGGAA GATGTGGACA TGAGCAGTGG CTCAAGTGGG 120
AATGAAAACT GCTCCATGGG GCGGGACTCC CAGGGCAGCG ACTGCGAGGA CAACGGGAAG 180
GAGCTGGGGA TGCTGGTGGA GACCGCCAAC ACCCGGGAGA GCCCTGGTGC CTTTGGCCTT 240
GCAGTGACAG AGCCCCAGGG CAGTGCCCCC ACCCTCCCCT GCCCCAGCGA GCAGTCTGCC 300
AAAGCCGACG CACACCGAGA GCTGGTAAGA ACGCTGAGAG AGCTGAAGGT CCACCTCCCC 360
GCGGACAAGC AGGCCAAGGG CAAGGCCAGC ACCTTGGCGA CCCTGAAATA CGCCCTGAGG 420
AGCGTGAAGC AGGTGAAAGC GAATGAGGAG TATTTCCAGC TGCTCATGTC CAGCGACAGC 480
CAGCCCTGCT GCGCAGGCGT GCCTTCCTAC ACGGTGGCGC AGGTGGAGGG TGCCACCTCG 540
GAGTACGTCC TGAAGAACGC GGATATGTTT GCTGTGGCCG TGTCCCTGGT CACTGGGAAG 600
ATCCTGTACA TCTCTGACCA AGTCGTGTCC ATCTTCCGCT GTAAGAGAGA GGCCTTTGGG 660
GACGCTCAGT TCGTGGCGTT CCTGGCGCCC CAGGACGTCA GCGTGTTCCA CAGCTGCACC 720
ACCCCTTGCA AGCTCCCGCC CTGGAGCATG TGCGGCGGAG TAGATTCTTT CACTCAGGAA 780
TGCATGGAGG AGAAGTCTTT CTTTTGCCGT GTGGGTGTCG GGGAGAACCA CGAGAACGAG 840
ATCCACTACC AGCCGTTTCG CATGACGCCC TACCTGGCCC AGGTGCAGGA GCGGCCGGGC 900
ACCGAGAGCC AGCTCTGCTG CCTGCTGCTG GCAGAGAGGG TGCACTCTGG CTATGAAGCT 960
CCTAGGATTC CTCCTGAGAA GAGAATCTTC ACCACGACGC ACACTCCGAA TTGCTTGTTC 1020
CAAGACGTGG ATGAAAGGGC GGTCCCCCTC CTGGGCTACC TACCTCAGGA CCTGATGGAG 1080
ACTCCAGTGC TCCTGCAGCT CCACCCCAGC GACAGGCCCC TGATGCTCGC CATCCACAAG 1140
AAGATCCTGC AGTCCGGTGG GCAGCCTTTC GACTATTCTC CCATGCGCTT CCGCGCCCGG 1200
AACGGGGAGT ACGTCACACT GGACACCAGC TGGTCGAGCT TCATCAACCC CTGGAGCAGG 1260
AAGATCTCCT TCATCATTGG GAGGCACAGA GTCAGGGTGG GCCCTCTGAA TGAGGACGTG 1320
TTTGCTGCGC CCCCGTGTGC CGAGGAGAAG GCCCTGCCGC CCAACCTTCA GGAGCTCGCG 1380
GCGCAGATCC ACCGGCTGCT GCTGCAGCCG GTCCCCCACA GCGGCTCCAG TGGCTACGGG 1440
AGCCTGGGCA GCAACGGGTC CCATGAACAT CTCATGAGCC AGACCTCCTC CAGCGACAGC 1500
AACGGCCACG AGGAATCTCG CCAGAGGAGA GCCGAAATTT GTAAAAATGG TAACGACAAG 1560
ACGAAAACCA AAACTCATTT TTCTCATGAA TCTGGAGAAC AAAAGAAAAA ATCTATTACA 1620
GAAATGCAGA GCAGTCCTCC AGCTCAGGGG AAAGATGTTC CTGCCACAGA AGAGGACAGC 1680
CTGGGAGCCA GCAGGCCCAG GGCTAGTGTC CCCGAGGAGC TGGCTTGCAA GGACCAGCCC 1740
ACCTGCTCCT ACCAGCAGAT CAGCTGCCTG GACAGCGTCA TCAGGTACCT GGAGAGCTGC 1800
AGCGAGGCTG CCACCCTGAA GAGGAAGTGT GCGTCCCCAG CCAACATCCC GTCACCAAAG 1860
GCCACAGCCA GCCCTGGGCT GCACGCAGGA GGGGCAGCAT CACCCGCCAA GGTGAGCAGC 1920
CGCAGGGAAG TCAGTGCCCG CCTGAGCTCG CTGACCCTGC CCGGCAAGGC TGAGAGCGTG 1980
GTGTCCCTCA CCAGTCAGTG CAGCTACAGC AGCACCATCG TCCACGTTGG GGACAAAAAG 2040
CCGCAGCCTG AGTCAGAGAT GGTGGAGGAC GCAGCGAGTG GACCTGAGTC CCTGGACTGC 2100
CTGCCCCACA GTCTGGGCCA GGAGAAGGGG CCCCTGCAGA ACCTGGGCCT CACCAAGGAA 2160
GTGCTGGCCG CGCACACGCA GAGAGAGGAG CAGAGCTTCC TGCAGAAGTT CCGTGGAGCC 2220
AGGAGACTCG GGGTGCTCCC GGCTCACTGC CATTACTACT CACGAGAAAG ATCTGGGGGG 2280
CCCTCGAGTG AGAGCACTGC TCCTGGACTA AGAAGTACTT CTGGGATAGA CTCATCTTGG 2340
AAAAAAACAG GAAAGAACCG AAAACTCAAG TCCAGAAGGG CCAGGCCTCG GGGACCCTCC 2400
CAGAGCGCAG GGCCTGGAGG GCTGGAGCCC CACCGCCGCC CACTGGCCAG CCTGAGTGCC 2460
ACGGCCTGGT CACCCTCAGA CACATCCCAG TCCAGCTGCC CTGCTCTGGC CTTCCCCGCT 2520
GCAGTGCCCA CATATCCCCT GCCCATGTTC CCAGCGCCGG GCACCATGGT GTCGCCGCCT 2580
GCAGCTCCCC ACACCAGCTT CGCGGTGCCC GCCCTGCCTG TGGGTCCCCA GCACGAGTTC 2640
GCAGTCCAGC CCCTGCCCTT CAGCGCCCCT GTGGCCCCGC TCGTGGCCCT CATGCTCCCC 2700
ACCTGTCCCT TCCCACCAGT GGCCCCAAAC CTGCCCCAGG CCTTCTTCCC CGGCCACCCC 2760
AGGCTCCCCT CTGGAGTGAC TCCTGGCTCC CAGCCCGAGG CCCCCCAGCA GACCCCACTC 2820
CCCAGGCGGC CCTGCCCTCG CCCAGCCACC CCGCCGTCAG CCACAGTGGC CGCAGGCAGG 2880
GCCTCACCGC CGCTCTTCCA GTCCCGAGGC AGCTCGCCCT TGCAGCTCAA CCTGCTGCAG 2940
ATGGAGGAGC CACCCGAGGG CAGCGCTGCG GCCACAGCGA CCTTGGGCCA CCCTGGAACA 3000
GCAGCTGCCA GGCCCGACTG CACGCCTGGC GCTCCTCGGG ACCAGCAGGC AAAGGCGCCC 3060
CCCACACGAG AAGAGCCCTC GGATGCCCAG GAGAGTGACG CCCTGTCTGT GTCCAGCGAC 3120
CTGCTCAACC TGCTGCTGAG TGAGGACCTC TGCTCGGCCA CCGGGTCAGC CCTGTCTGGG 3180
AGTGGGGCCT CTGCCACCTC GGGTTCCCTG GGATCCAGCT CGCCAGGCTG CAGCGCGTCC 3240
CACAGTGGGG CTGGCAGTAG TGACACCAGT CGTACCAGCA AATATTTTGG AAGCATTGAC 3300
TCTTCAGAGA ATCATCACAA AGCAGAAATG GACAGGAGCA AGGGGCAGAG TGAGCACTTC 3360
ATCAAGTACG TCCTGCAGGA CCCCATCTGG CTGCTGATGG CGGACACGGA CGACAGCATC 3420
ATGATGACCT ACCAGCTGCC TTCCCGGGAT CTGGAGTCGG TCCTGAAGGA AGACAGAGAA 3480
AAGCTGAAGC TGCTGCAGAG GTCCCAGCCC TGGTTCACCG AGGGCCAGAG GCAGGAGCTG 3540
CGGGAGGTCC ACCCGTGGGT CCAGACAGGG GGCCTGCCCG CAGCCATCAA CGTGGCGGAA 3600
TGTGTTTACT GTGAAAGTGA AGAGAAGGGC AGCATCTGTG TGCCGTATGA GGGGGACATT 3660
CCTTCCCTGG GACTCAGCGA TGCGTCCGAC ACCAAAGAAG AGGAAAGTGG GCAAGCCCCG 3720
AGGCCCAGGG CGGGGGAGCA GACGTAACCC CGGCCAACGG CAGGGACCTG CGTAGACGGT 3780
GCCTGGAAGA GACGGAAGGT CTTCACGTTT GCTTCTAATG AAATGGACAT AGATGCTTAC 3840
GTTGCTTCTT GTCTTAGGAA AAAAAAACAG TTTTCTGAAG TGGTGATTTA AAACTGGAGA 3900
GTAGGAAGGG TTTAGGAAGA AATATGTTTT CATATTTAAA ATACAAACAT GGAGTTTGGG 3960
GGTGGAGCAG AGATTTGGGT TGTTGCTGGA CTTGAAGAAG ATGGAGACCC ATCCGTGGAC 4020
GTTTCAGGGA AGTTGCCGCA GTGCCCTTGG AAGTTCTTCA ACCACAGTGA GACCTCTGGT 4080
CCAGTGCACC AGCATCCACT GGCCCCTGTG GGTTGACCCA AGACATCATG GCAGGCTGTG 4140
ACAAATGGCC AGGAAGCCAT GAGTGGCTCT GAGCTGAGGA CTCCAGTGTC CTGGAGCTTC 4200
CCAGGGAGTC TTTAGATTGG ATCAACTTCT CTCCTCAGGG GCTTATCCGC AGTGGTCATT 4260
AGTCCAGCCA GGTGTTGGTT CCTATACTGC AGAGGTAACA GCCTCTCCTC GTGTTCTTCA 4320
AAGGCTTCAC ATGAGGTGGT GTGCACCTAA CTCGCCGCTT GGCTTCCAGG ACCGCGGTGG 4380
TGGACATTTT GGTCTGACGT GCTCCTGTTT GTAGAGAACA AAGTTGAAAT GCTCGCTTCA 4440
GCTTTGAACA GAGCCCAGTG GTTTGTGTGA CCAGCTTCAT CAGACTGATG CCCGCCCAGA 4500
TCCTGGGAGC GTTTCCACCT CGTCCTCACA CCCCTTCAGA CCAGATGGTC AATAGCAGAG 4560
AGAAGTACGT GACCAGTCAT ATCTTCATGG TGACCTCCCC TGCAAACCAA GCCTTGACCA 4620
CTTTGCAGGG GACCCAGTCG TGTCTGGGCT TCGGTCGGAG CCTCTCAGAC ATCAGCTCTG 4680
ACCCAGCAAA GCCAGTGCCA GCTCCTGGCA GAGAACAGCC TTGGCAACCG GGAGCTGGCG 4740
GCCCACCGCT GCTGACTCCA TCGCGTGTTC CAGGACGGTG GGCTCCCCTC CCCCTACACC 4800
CTGGGGCTGC CTGGCCCTCA CTATTTCATG TGCCTGTCCT CTCTTGGTAC AGCTTCAGGT 4860
CTCTGCTGTG ACATCTGCCA GCACTGCCAC ACTTCCAGAT TATCTGAACT CTTGGGGAAG 4920
AAGACCAGTC TGTCTGCCCG ACTTTAGAAC ACTCACGTGC ACCAGGTATC CCAAAGGCTG 4980
CTGGGAAAGT ATAATGTTCG TCCCTGTTGT GAGTAAGAAG TTGCAGCTGG TGAATCTGTT 5040
CCCTTAAAAT TGGAATGAGA CCGTGATGCT TGATAGGAAG CAGGTTTCCC TGTTCTTTGG 5100
GAAAAAAACA GCTACAAGAA AGGTGGCATC TCCTCATAAA ACCATTTTAT GCCTGAATGT 5160
TAATACTATT TTTTATTAAT ACAAGAACAC TTTTTTTTTT AAATTTACAA AGCAACAGCA 5220
CCTGCAGTTG CCCAAGCGAT GGTGGTAGTC TGTGTTCACG AGCATGGTGG GCGGCTGGCT 5280
GCCTCCGCCT CAGATCCTAA GGGACAGATG GTAGACTAAG GTTACACTTA GGGTTCCAAA 5340
CACAAAACTG CCAAAATGCT CTCTCTCCTG CCGTGAATGT TTTCCATCAG CATTATTGTA 5400
TTTACTCCAT GCTCACTGGT TGTTAACTGC TCAGAAGTTG ACTTCATAGG GTGATTTTGT 5460
GAATTTGTTT ACATGATGCC AAGCATCGAG TCCTGTCTCT CTAGTGTGTG TGCTTACACG 5520
GGTGTCAGAA AACCTTTTCT CTGTTTTAAA CTGAGCCTTC TTTTTAATAT ATTCATGAGA 5580
AGATGTGTAA ATAAGCCGTC AGAGTTTACG TGATGATTTG TTGAGCCTTG CCGGACAAGT 5640
GGTTTGTTCA TGCACAAACC AAACTCTCCT CACCCAGTGC AATATATCTG TGTGACTGCT 5700
TGTGTCTTTT TATGATGTTT TTGCCTTTTA GAAAATTGGT AAATAAAGCA AATATATTTT 5760
TATTTTAAGT TGCATGTTTG TTTTGTTTTG TGGTAAAAGA TGATCAAGAG GTGTTTGAGT 5820
ATTTTTGTTT GTTTT 5835
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-CaE-021686Caenorhabditis elegans25.67 3.30e-20 98.21
CGD-EqC-020992Equus caballus66.17 0.00e+00 1548.9
CGD-GaG-021834Gallus gallus49.22 0.00e+00 1122.5
CGD-HoS-021036Homo sapiens (Human)67.77 0.00e+00 1687.2
CGD-MuM-021066Mus musculus (Mouse)69.15 0.00e+00 1703
CGD-RaN-022186Rattus norvegicus68.36 0.00e+00 1686.4
Gene Ontology

GO:0005737--cytoplasm
GO:0005634--nucleus
GO:0005515--protein binding
GO:0005654--nucleoplasm