CGDB Gene Information

Tag Content
CGDB ID CGD-LaC-051209
Ensembl Accession ENSLACP00000005462.1
Protein Name PER2
Ensembl Information ENSLACG00000004859; ENSLACT00000005510
Organism Latimeria chalumnae
NCBI Taxa ID 7897
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 6 ZT 18 LD 5 skeletal muscle Predicted from orthologs F6ZZH0
CT 4 CT 12 DD2 27 aortic smooth muscle cells Predicted from orthologs O15055
ZT 4 ZT 21 LD 5 human HaCaT keratinocytes Predicted from orthologs O15055
ZT 1 ZT 19 LD 2.67 human hair follicle cells Predicted from orthologs O15055
CT 12 CT 0 LL1 3.43 oral mucosa Predicted from orthologs O15055
CT 3 CT 15 DD2 5 U2OS cells Predicted from orthologs O15055
CT 6 CT 18 DD1 4 SCN Predicted from orthologs O54943
CT 9 CT 3 DD1 3 eye Predicted from orthologs O54943
ZT 19 ZT 7 LD 2.5 amygdala Predicted from orthologs O54943
ZT 12 ZT 4 LD 2 bone Predicted from orthologs O54943
ZT 13 ZT 5 LD 2.4 bone marrow Predicted from orthologs O54943
ZT 18 ZT 6 LD 1.89 brain Predicted from orthologs O54943
ZT 15 ZT 23 LD 3 cortex Predicted from orthologs O54943
ZT 13 ZT 2 LD 10 heart Predicted from orthologs O54943
ZT 13 ZT 1 LD 2.5 hippocampus Predicted from orthologs O54943
ZT 16 ZT 0 LD 25 jejunum Predicted from orthologs O54943
ZT 15 ZT 23 LD 6 kidney Predicted from orthologs O54943
CT 15 CT 3 DD1 4 liver Predicted from orthologs O54943
ZT 16 ZT 4 LD 7 liver Predicted from orthologs O54943
CT 18 CT 6 DD2 10 MEFs Predicted from orthologs O54943
ZT 17 ZT 1 LD 6 megakaryocytes Predicted from orthologs O54943
ZT 18 ZT 6 LD 3 n primary visualcortex (V1) Predicted from orthologs O54943
CT 0 CT 12 DD2 10 NIH-3T3 cells Predicted from orthologs O54943
CT 12 CT 0 DD3 4.79 ovary Predicted from orthologs O54943
ZT 12 ZT 4 LD 5 pituitary gland Predicted from orthologs O54943
CT 12 CT 20 DD3 5 retina Predicted from orthologs O54943
ZT 12 ZT 16 LD 5 retina Predicted from orthologs O54943
CT 12 CT 20 DD3 6 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
ZT 0 ZT 16 LD 2 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
CT 9 CT 21 DD1 6 SCN Predicted from orthologs O54943
CT 8 CT 16 DD1 20 SCN Predicted from orthologs O54943
CT 15 CT 3 DD1 3 skeletal muscle Predicted from orthologs O54943
CT 14 CT 2 DD3 12 suprachiasmatic nucleus (SCN) Predicted from orthologs O54943
ZT 16 ZT 4 LD 9 abdominal adipose tissue Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 anterior cingulate Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 2.05 area postrema Predicted from orthologs Q9Z301
ZT 18 ZT 2 LD 6.38 AV3V Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 14 basolateral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 10 ZT 6 LD 2 caudal ventrolateral medulla Predicted from orthologs Q9Z301
CT 12 CT 8 DD17 4.35 colon Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 3.29 dorsal vagal motor nucleus Predicted from orthologs Q9Z301
ZT 2 ZT 14 LD 1.8 dorsomedial nucleus Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 5.5 entral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 5.7 heart Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 15 hippocampus Predicted from orthologs Q9Z301
ZT 16 ZT 3 LD 57 intestinal jejunal mucosa Predicted from orthologs Q9Z301
CT 16 CT 4 DD17 5 liver Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 8.5 liver Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q9Z301
ZT 0 ZT 12 LD 7 nucleus accumbens shell Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.07 nucleus ambiguus Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.63 paraventricular nucleus Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 4 prefrontal cortex Predicted from orthologs Q9Z301
ZT 12 ZT 8 LD 2.5 PVN Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 rostral agranular insula Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 3.92 SCN Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
Descriptionperiod circadian clock 2 [Source:HGNC Symbol;Acc:HGNC:8846](View all)
Protein Sequence
(Fasta)		 MSSYSESRHE QVELALHSDG SDSSQDQRTS SQRRPDTCHD DIEMKSNGSS GHDSNGHDSL 60
GSSRGSLSGN GKDSAVLLES SECHKSSNAF SLISASSEQD NPSTSGCSSE QSAKAKTQKE 120
LMKTLKELKT HLPPEKRSKG KSNTLATLKY ALRCVKQVRA NEEYYQLLMI NDSHSTSLDI 180
SSYTIEEIEN ITCEFTLKST DIFAVAVSLN TGKIVYISDQ AASTLNCKRD VFKNSKFVEF 240
LAPQDVSVFY SFTTPYRLPS WSMCTSAERD SSQDCMQEKS FFCRISKDRE RDCDIHYHPF 300
RMMPYLMKVQ DAETSEDQLC CLLLAERVHS GYEAPRIPLD KRIFTTTHSP NCVFQDVDER 360
AVPLLGFLPQ DLIGTPVLMY LHPSDRAKML VIHKKVLQFA GQPFDYSPVR FCTHNGEYIT 420
IDTSWSSFVN PWSRKVSFII GRHKIRTGPV NEDVFAAPSF TETKTIAPDI QEITEQIHRV 480
LLQPVHNSGS SGYGSLGSNG SHEQVMSAAS SSDSNGNNQG DKPRTFQEIC KGVHNLKNKG 540
QQVSIECITK TDPKVFFGRG ELQDAPDGRR NAVVGMAEKN ITSDEMVCKE QPRYSYQQIN 600
CLDSVIRYLE SCNIPSTMKR KCESSSNTTS STSDDDKQRE PRTTVGLKSS NNTAAAAVIG 660
TQLKPLALPS KAASVVSITS QCSYSSTIVH VGDKKLQPEL EIIEDGLCGT DPAENQPLPL 720
SSATTSSVNQ EKEYWKLGLT KEVLAAHTQK EEQTFLSKFK ELRQLKMFES PSNLYRHERP 780
KGRTGEVWTR GTRAGIHLVE STIKKVGKNR KSKSKRIKQQ ESSDSTASHA NQRHKPPLVG 840
LNNTSWSPSE TSQASYPAMP FPAMTPAYTL PVFTPPGPVP QVPTDPSLPS FNENFNPQDI 900
HCHLQPPQYS APLVTSMVAL VLPNYMFPQM NSSVAQPFYP SQPPFTTQPS FPTPSAFTGQ 960
PAFPAQPHFS AQASFCAQPP YSTQKPQNQA LPPLFQSRCS SPLQLNLLQL EEMPKERLGV 1020
VYASSGLTNS GFAGSLVKEE NSRDTGPADV LKVESAGEAQ NSDTHSTSSD LLDLLLQEDS 1080
QSGTGSALSG SGGSLVSGSM GSGSNGCDMS GSGTGSSQTS NTSKYFESID SSEVDHKSLL 1140
KKGMEESEHF IKYVLQDPIW LLMANTDDSV MMTYQIPSRD LETVLKEDRE KLKRMQKLQP 1200
KFTEEQKKEL VEAHPWIKKG GLPKAIDITE CSCCEDSTQG GLSTPYDVEI HDLELSEVIG 1260
PSEEETPSNL LHNLTITN 1278
Nucleotide Sequence
(Fasta)		 GCGGGGAGTC TCACGTTTTG CACTGTGTGA GGGAGTGCAG TTGTATGGAA GGCTGATCGG 60
AGTTTAAAAA GCTTTACAGA GGTTTGCTCT CATTTAATCG GAGAAACCCC TTTTTATTTT 120
TAAAATAAAA ATTTAGAAAC AGCTTGGCGT CGGCAACGGA TTCGGAGTTT TACAATAGGA 180
AAAAAAATAA ATAATTGGTT TTGTTCAAGT AGGCAAATAA GCAGGTTCTA GATTTTGTTT 240
CGTTTGTGAA GAAAAACTTG ACCTCTTAGA AGTGGAGAGG AGACTGGGTT GAGGCTGTTC 300
CTGTTCTTCT TAAAAAGGTT GTAGCATCTC AGGATTCCTG TCCAGTGTCA ACTCCAACAG 360
TAAAGAGCAG AATCCCAGTC ATTGCCTTGG TTTTGGTGAA AATGATCCAT AGGTATCCTT 420
CTCAGTAAAG TAAGAGAATG AGTAGCTATT CAGAATCTAG ACATGAGCAG GTTGAGCTGG 480
CACTCCATTC TGATGGGAGT GATAGTAGCC AGGACCAGAG AACATCATCT CAGCGGAGAC 540
CAGACACTTG CCATGATGAT ATTGAAATGA AGAGCAATGG CTCAAGTGGA CATGATTCTA 600
ATGGACATGA CTCTTTAGGA AGTTCACGTG GTAGCTTGAG TGGAAATGGA AAAGATTCGG 660
CAGTTCTGCT GGAATCTTCT GAATGTCATA AAAGCTCTAA TGCTTTTAGT CTTATAAGTG 720
CAAGTTCTGA ACAAGACAAC CCTTCAACAA GTGGCTGCAG CAGTGAACAG TCTGCCAAGG 780
CTAAGACTCA GAAAGAGTTG ATGAAAACAT TGAAAGAGTT GAAGACTCAT CTTCCTCCTG 840
AAAAAAGGTC CAAAGGCAAA TCAAACACAC TTGCCACATT GAAGTATGCT TTGCGATGTG 900
TTAAACAAGT GAGAGCCAAT GAAGAATACT ACCAGCTCTT AATGATCAAT GATAGTCATT 960
CCACCAGCCT GGATATTTCT TCTTATACCA TTGAGGAAAT CGAGAACATA ACCTGTGAAT 1020
TCACCCTAAA GAGCACAGAT ATTTTTGCTG TGGCTGTTTC CTTGAATACA GGAAAAATTG 1080
TGTACATCTC TGACCAAGCT GCCTCTACTC TTAACTGTAA AAGAGATGTC TTTAAGAATT 1140
CCAAGTTTGT GGAATTTTTG GCACCTCAGG ATGTAAGTGT GTTCTATAGC TTCACAACCC 1200
CCTACAGGCT GCCATCATGG AGTATGTGTA CTAGTGCTGA AAGAGATTCT TCTCAAGACT 1260
GCATGCAAGA GAAGTCGTTT TTCTGCCGAA TCAGCAAGGA CCGGGAACGA GACTGTGATA 1320
TCCACTATCA CCCATTCCGT ATGATGCCTT ACCTCATGAA AGTACAAGAT GCTGAAACTT 1380
CTGAGGACCA GCTATGCTGT TTGTTGCTCG CAGAGCGAGT ACATTCTGGG TATGAAGCTC 1440
CCAGGATTCC TCTAGACAAA AGGATATTTA CCACAACTCA CTCACCGAAC TGTGTGTTCC 1500
AGGATGTAGA TGAGAGAGCT GTGCCATTAT TGGGATTCCT TCCCCAGGAT CTTATTGGAA 1560
CACCTGTGTT AATGTACCTT CATCCGAGTG ACAGAGCTAA AATGCTAGTG ATTCATAAGA 1620
AAGTATTACA GTTTGCTGGG CAGCCTTTTG ATTATTCACC AGTCCGTTTC TGTACTCATA 1680
ATGGAGAGTA CATCACGATA GATACCAGCT GGTCAAGCTT TGTCAATCCC TGGAGCAGAA 1740
AAGTTTCTTT TATTATAGGA AGACACAAAA TCCGAACTGG TCCTGTCAAT GAAGATGTGT 1800
TTGCAGCTCC TAGTTTTACG GAGACAAAGA CCATTGCTCC TGATATTCAG GAAATTACAG 1860
AACAGATTCA CAGAGTGTTG TTGCAGCCTG TGCACAACAG TGGTTCTAGT GGGTATGGTA 1920
GTTTGGGTAG TAATGGTTCA CATGAACAGG TAATGAGTGC AGCTTCTTCC AGTGACAGCA 1980
ATGGAAACAA CCAAGGGGAT AAGCCTAGAA CATTCCAGGA GATTTGTAAA GGTGTTCACA 2040
ATCTCAAAAA CAAAGGACAA CAGGTTTCCA TTGAATGCAT AACCAAGACT GATCCCAAGG 2100
TTTTTTTTGG AAGGGGGGAG CTGCAGGACG CACCAGATGG TAGAAGAAAT GCAGTTGTTG 2160
GTATGGCTGA AAAAAATATC ACTTCTGACG AAATGGTGTG TAAAGAACAG CCTAGATACT 2220
CCTATCAACA AATAAACTGT TTGGATAGTG TCATTCGGTA TTTGGAAAGT TGCAATATTC 2280
CTAGCACAAT GAAGAGGAAA TGCGAGTCTT CCTCCAACAC TACTTCATCC ACTTCTGATG 2340
ACGACAAGCA GAGAGAACCT CGAACCACAG TTGGATTAAA ATCATCGAAT AATACAGCGG 2400
CAGCTGCTGT CATCGGTACC CAGTTAAAAC CTTTAGCATT ACCAAGCAAA GCAGCGAGTG 2460
TGGTCTCAAT CACTAGCCAG TGCAGTTATA GCAGTACTAT TGTTCATGTT GGGGACAAGA 2520
AACTGCAGCC CGAGTTAGAA ATTATTGAAG ATGGGCTCTG TGGAACTGAC CCAGCAGAAA 2580
ACCAGCCTCT TCCACTTTCT TCTGCTACAA CATCATCTGT AAATCAAGAA AAAGAATATT 2640
GGAAACTGGG GCTTACCAAG GAGGTTCTAG CAGCACACAC CCAGAAAGAA GAGCAAACGT 2700
TTCTCAGCAA ATTCAAGGAA CTCCGCCAGC TCAAAATGTT TGAATCTCCA AGTAATTTGT 2760
ATCGGCATGA AAGACCTAAA GGACGAACAG GGGAAGTTTG GACTCGGGGA ACTAGAGCAG 2820
GCATTCATCT TGTGGAATCC ACAATAAAGA AAGTGGGAAA GAACAGAAAA TCGAAATCGA 2880
AACGAATTAA GCAGCAAGAA TCCTCTGATA GCACTGCTTC TCATGCAAAC CAGCGCCATA 2940
AACCTCCACT GGTGGGCCTC AACAATACTT CTTGGTCACC ATCAGAGACC TCTCAAGCAA 3000
GTTATCCAGC TATGCCCTTC CCCGCAATGA CGCCAGCATA CACACTGCCA GTTTTTACAC 3060
CACCTGGGCC AGTACCTCAA GTTCCCACTG ACCCATCCTT ACCTAGTTTT AATGAGAATT 3120
TTAACCCACA AGACATTCAC TGCCACTTGC AGCCACCACA GTACTCTGCG CCTCTTGTAA 3180
CCTCCATGGT GGCACTTGTT TTACCCAACT ATATGTTCCC TCAAATGAAC AGTTCAGTTG 3240
CCCAGCCTTT TTACCCCAGT CAGCCTCCAT TTACTACCCA GCCGTCTTTT CCAACTCCAT 3300
CTGCTTTTAC TGGGCAACCA GCATTCCCAG CACAGCCTCA TTTCTCTGCA CAAGCTAGTT 3360
TTTGTGCCCA GCCCCCATAT TCTACACAAA AACCCCAAAA CCAGGCTTTG CCACCTTTGT 3420
TCCAGTCAAG ATGTAGTTCA CCTTTGCAGC TAAACCTCCT GCAGTTGGAA GAAATGCCTA 3480
AGGAGCGACT GGGTGTTGTG TATGCAAGTA GTGGTTTAAC TAATAGTGGT TTTGCTGGTT 3540
CACTGGTCAA AGAAGAAAAC TCCAGAGACA CTGGCCCAGC TGATGTTCTC AAGGTTGAAT 3600
CAGCAGGTGA GGCCCAAAAC AGTGACACTC ACTCCACATC TAGCGATCTG CTTGACCTCT 3660
TGCTTCAAGA AGATTCGCAG TCTGGCACTG GTTCGGCTCT TTCAGGCAGT GGTGGATCAT 3720
TGGTTTCTGG GTCCATGGGC TCTGGATCCA ATGGATGTGA CATGTCGGGA AGTGGAACAG 3780
GAAGCAGCCA GACAAGCAAC ACCAGCAAAT ATTTTGAAAG CATTGATTCT TCTGAAGTTG 3840
ACCATAAGTC TCTGTTGAAA AAGGGGATGG AAGAAAGTGA ACACTTTATT AAATATGTGC 3900
TTCAGGATCC CATTTGGTTG TTAATGGCAA ACACAGATGA TTCAGTTATG ATGACTTATC 3960
AGATTCCATC ACGGGATTTG GAAACTGTTC TCAAAGAGGA TAGAGAAAAG CTAAAGCGAA 4020
TGCAGAAATT GCAGCCGAAG TTCACTGAAG AACAGAAGAA AGAACTTGTG GAGGCTCATC 4080
CCTGGATTAA GAAAGGTGGA TTGCCAAAAG CAATTGATAT CACAGAATGC AGTTGCTGCG 4140
AAGATAGTAC ACAGGGTGGT TTATCAACGC CTTATGATGT AGAAATTCAT GATCTAGAAC 4200
TTAGTGAAGT GATTGGACCC AGTGAGGAGG AAACACCTAG CAATTTATTG CATAACTTAA 4260
CTATAACAAA T 4271
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020992Equus caballus47.03 0.00e+00 1003.4
CGD-HoS-021036Homo sapiens (Human)47.61 0.00e+00 1034.2
CGD-MuM-021066Mus musculus (Mouse)44.81 0.00e+00 964.9
CGD-RaN-022186Rattus norvegicus44.87 0.00e+00 965.7