CGDB Gene Information

Tag Content
CGDB ID CGD-SuS-044235
Ensembl Accession ENSSSCP00000017312.2
Ensembl Information ENSSSCG00000016338; ENSSSCT00000017793
Organism Sus scrofa
NCBI Taxa ID 9823
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 6 ZT 18 LD 5 skeletal muscle Predicted from orthologs F6ZZH0
CT 4 CT 12 DD2 27 aortic smooth muscle cells Predicted from orthologs O15055
ZT 4 ZT 21 LD 5 human HaCaT keratinocytes Predicted from orthologs O15055
ZT 1 ZT 19 LD 2.67 human hair follicle cells Predicted from orthologs O15055
CT 12 CT 0 LL1 3.43 oral mucosa Predicted from orthologs O15055
CT 3 CT 15 DD2 5 U2OS cells Predicted from orthologs O15055
CT 6 CT 18 DD1 4 SCN Predicted from orthologs O54943
CT 9 CT 3 DD1 3 eye Predicted from orthologs O54943
ZT 19 ZT 7 LD 2.5 amygdala Predicted from orthologs O54943
ZT 12 ZT 4 LD 2 bone Predicted from orthologs O54943
ZT 13 ZT 5 LD 2.4 bone marrow Predicted from orthologs O54943
ZT 18 ZT 6 LD 1.89 brain Predicted from orthologs O54943
ZT 15 ZT 23 LD 3 cortex Predicted from orthologs O54943
ZT 13 ZT 2 LD 10 heart Predicted from orthologs O54943
ZT 13 ZT 1 LD 2.5 hippocampus Predicted from orthologs O54943
ZT 16 ZT 0 LD 25 jejunum Predicted from orthologs O54943
ZT 15 ZT 23 LD 6 kidney Predicted from orthologs O54943
CT 15 CT 3 DD1 4 liver Predicted from orthologs O54943
ZT 16 ZT 4 LD 7 liver Predicted from orthologs O54943
CT 18 CT 6 DD2 10 MEFs Predicted from orthologs O54943
ZT 17 ZT 1 LD 6 megakaryocytes Predicted from orthologs O54943
ZT 18 ZT 6 LD 3 n primary visualcortex (V1) Predicted from orthologs O54943
CT 0 CT 12 DD2 10 NIH-3T3 cells Predicted from orthologs O54943
CT 12 CT 0 DD3 4.79 ovary Predicted from orthologs O54943
ZT 12 ZT 4 LD 5 pituitary gland Predicted from orthologs O54943
CT 12 CT 20 DD3 5 retina Predicted from orthologs O54943
ZT 12 ZT 16 LD 5 retina Predicted from orthologs O54943
CT 12 CT 20 DD3 6 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
ZT 0 ZT 16 LD 2 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
CT 9 CT 21 DD1 6 SCN Predicted from orthologs O54943
CT 8 CT 16 DD1 20 SCN Predicted from orthologs O54943
CT 15 CT 3 DD1 3 skeletal muscle Predicted from orthologs O54943
CT 14 CT 2 DD3 12 suprachiasmatic nucleus (SCN) Predicted from orthologs O54943
ZT 16 ZT 4 LD 9 abdominal adipose tissue Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 anterior cingulate Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 2.05 area postrema Predicted from orthologs Q9Z301
ZT 18 ZT 2 LD 6.38 AV3V Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 14 basolateral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 10 ZT 6 LD 2 caudal ventrolateral medulla Predicted from orthologs Q9Z301
CT 12 CT 8 DD17 4.35 colon Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 3.29 dorsal vagal motor nucleus Predicted from orthologs Q9Z301
ZT 2 ZT 14 LD 1.8 dorsomedial nucleus Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 5.5 entral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 5.7 heart Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 15 hippocampus Predicted from orthologs Q9Z301
ZT 16 ZT 3 LD 57 intestinal jejunal mucosa Predicted from orthologs Q9Z301
CT 16 CT 4 DD17 5 liver Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 8.5 liver Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q9Z301
ZT 0 ZT 12 LD 7 nucleus accumbens shell Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.07 nucleus ambiguus Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.63 paraventricular nucleus Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 4 prefrontal cortex Predicted from orthologs Q9Z301
ZT 12 ZT 8 LD 2.5 PVN Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 rostral agranular insula Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 3.92 SCN Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
Protein Sequence
(Fasta)		 APRIPPEKRI FTTTHSPNCL FQDVDERAVP LLGHLPQDLI ETPVLVQLHP SDRPLMLAIH 60
KKSRSPSRGP SWGRLPTVSA RWDGGEYVTL DTSWSSFVNP WSRRVSFIIG RHRVRVGPLN 120
EDVFSAQPCM EEKALQSGVQ EFTEQIRRLL LQPVPHSGSS GYGSLGSNGS HEHLMSQTSS 180
SDSTGQEDPC RRRVEICKND NKVKNESHYP GASGQQESQS AAATQSSSLA HVSTVPAAEK 240
DSSGASLPEE LACKNPPAGS YQQISCLDGV IRYLESCSEA ATLKRKCEFP AHLPTPKASD 300
KRKATASPGP HSAETASASK MNSRADVSTH LTSLTLPGKA ESVVSLTSQC SYSSTIVHVG 360
DKKPQPELET VEDATSGPES LDCLAGPALP CSLGQDPEPF RKLGLTKEVL AAHTQKEEQS 420
FLLKFKEIRK LNIFQSPCHH YLQERSRAQP SERAAPGLRN PSGVDSSWKK NGKNRKLKSK 480
RVKPRDSSGS TGSGGPVPQR PPLLGLNATA WSPSDTSQSS CPSMPFPAPV PAYSLPVFPV 540
PGTVAAAPHA GFAVPVDTQH EFAVQPPAFA GPLAPVLALV VPSYPFSSVA SNLPQTFFPG 600
QPSFPSQVTP ASQSEFPGQT SFPKQPHACP RAEHGPPASR VATPATLPSA AGPAGRTSPP 660
LFQSRGSSPL QLNLLQLEET PEGSASATGA AGAGPDCKPG SAWDRQPKAL TTGEEPADAQ 720
NSDALSASSG LLHLLLHADV CSAAGSALSG SGASATSCSL GSGSQGCDAS PSGTGSSDTG 780
HSSKYFGSID SSEKNHKAKV KADRAENERF IKSVLQEPVW LLAADSDDRV MMTYQMPARN 840
VDTVLREDRE KLRALRGLQP RFTDGQRQEL QDVHPWMRSG GLPAALDVPE CVYCGNEGKG 900
GIGVPSEEHL PAPGLSEVAD TKEEGSGPPL SHRNREQT 938
Nucleotide Sequence
(Fasta)		 GCCCCTAGAA TCCCTCCTGA AAAGAGAATC TTCACGACGA CACATTCACC GAATTGCTTG 60
TTCCAGGATG TGGACGAAAG GGCGGTCCCC CTCCTGGGCC ACCTGCCCCA GGACCTGATT 120
GAGACCCCCG TGCTGGTGCA GCTGCACCCC AGCGACAGGC CGCTGATGCT CGCCATCCAC 180
AAAAAGAGTA GGTCCCCTTC TCGTGGTCCA TCCTGGGGGC GTCTGCCCAC GGTCAGCGCC 240
CGCTGGGACG GCGGGGAGTA CGTCACGCTG GACACCAGCT GGTCCAGCTT CGTCAACCCG 300
TGGAGCAGGA GGGTCTCCTT CATCATCGGG AGGCACAGAG TCAGGGTGGG GCCCCTGAAT 360
GAGGACGTGT TCTCGGCTCA GCCGTGCATG GAGGAGAAGG CGCTGCAGTC CGGCGTCCAG 420
GAGTTCACGG AGCAGATCCG CCGGCTGCTG CTGCAGCCCG TCCCCCACAG CGGCTCCAGC 480
GGCTACGGCA GCCTGGGCAG CAACGGCTCC CACGAGCACC TCATGAGCCA GACCTCCTCC 540
AGCGACAGCA CCGGCCAGGA GGACCCCTGC CGGAGGAGAG TCGAAATTTG TAAAAATGAT 600
AACAAGGTCA AAAACGAGAG CCATTACCCT GGTGCATCTG GACAACAAGA GAGCCAGTCT 660
GCTGCAGCGA CACAGAGCAG CTCCCTGGCG CACGTGAGCA CTGTCCCGGC TGCGGAAAAA 720
GACAGCTCGG GGGCCAGCCT GCCCGAGGAG TTGGCCTGCA AGAACCCGCC CGCCGGCTCC 780
TACCAGCAGA TCAGCTGCCT GGACGGAGTC ATCAGGTACC TGGAGAGCTG CAGCGAGGCC 840
GCCACCCTGA AGAGGAAGTG CGAGTTCCCC GCGCACCTCC CCACGCCCAA GGCCAGCGAC 900
AAGCGCAAGG CCACGGCCAG CCCGGGGCCG CATTCCGCAG AGACAGCATC GGCCTCTAAG 960
ATGAACAGCC GTGCGGACGT TAGCACGCAC TTGACCTCGC TGACGCTGCC CGGCAAGGCG 1020
GAGAGTGTGG TGTCCCTGAC CAGCCAGTGC AGCTACAGCA GCACCATCGT TCACGTGGGC 1080
GACAAGAAGC CACAGCCTGA GCTTGAGACG GTGGAAGATG CCACAAGTGG GCCTGAGTCT 1140
CTGGATTGCC TGGCGGGCCC TGCCCTGCCC TGCAGCCTCG GCCAGGACCC CGAGCCCTTC 1200
AGGAAGCTGG GCCTCACCAA GGAAGTGCTG GCTGCCCACA CCCAGAAGGA GGAGCAGAGC 1260
TTCCTGCTGA AGTTCAAAGA AATAAGGAAA CTCAATATTT TCCAGTCTCC CTGCCACCAT 1320
TACTTACAAG AAAGGTCCAG GGCGCAGCCG AGTGAAAGAG CTGCTCCTGG ACTAAGAAAT 1380
CCCTCCGGGG TGGACTCATC TTGGAAAAAA AACGGGAAGA ACAGAAAACT GAAGTCCAAA 1440
CGGGTCAAGC CTCGTGACTC CTCGGGAAGC ACTGGGTCTG GGGGGCCGGT GCCCCAGAGG 1500
CCCCCGCTGC TGGGTCTGAA TGCCACAGCC TGGTCACCAT CGGACACGTC TCAGTCCAGC 1560
TGTCCCTCAA TGCCCTTCCC TGCCCCGGTG CCAGCTTACT CCCTGCCCGT GTTTCCAGTC 1620
CCAGGAACCG TGGCAGCAGC ACCCCACGCC GGCTTCGCGG TGCCCGTGGA CACCCAGCAC 1680
GAGTTTGCGG TCCAGCCCCC GGCATTCGCC GGCCCCTTGG CCCCAGTCCT GGCGCTGGTG 1740
GTCCCCAGCT ACCCCTTCTC CTCAGTGGCC TCGAACCTGC CCCAGACCTT CTTCCCCGGC 1800
CAGCCTAGCT TTCCATCCCA GGTGACTCCT GCCTCACAGT CTGAGTTCCC TGGTCAGACC 1860
TCATTCCCCA AACAGCCACA TGCATGTCCT CGGGCAGAGC ATGGGCCACC AGCGTCACGT 1920
GTAGCCACCC CGGCCACCCT GCCATCAGCC GCTGGGCCCG CAGGCAGGAC CTCCCCGCCG 1980
CTCTTCCAGT CCCGCGGAAG CTCGCCCCTG CAGCTCAACC TGCTGCAGCT GGAGGAGACC 2040
CCCGAGGGCA GCGCCTCGGC CACGGGGGCG GCAGGTGCGG GGCCAGACTG CAAGCCTGGC 2100
TCGGCCTGGG ACCGGCAGCC GAAGGCACTG ACGACCGGCG AGGAGCCAGC CGACGCCCAG 2160
AACAGCGACG CCCTCTCAGC GTCCAGCGGC CTGCTCCACC TCCTGCTGCA CGCGGACGTC 2220
TGCTCTGCCG CGGGCTCGGC GCTCTCTGGA AGCGGGGCCT CCGCCACCTC CTGTTCCCTG 2280
GGCTCAGGCT CACAGGGCTG CGACGCATCC CCAAGTGGGA CAGGCAGCAG CGACACAGGT 2340
CACAGCAGCA AATATTTTGG AAGCATTGAC TCTTCAGAGA AAAACCACAA AGCGAAAGTG 2400
AAGGCGGACA GGGCGGAAAA TGAGCGCTTC ATCAAGAGCG TCCTGCAGGA GCCCGTCTGG 2460
CTGCTGGCGG CCGACTCCGA CGACCGTGTC ATGATGACCT ACCAGATGCC GGCCCGAAAC 2520
GTGGACACGG TTCTGCGGGA GGACAGGGAG AAGCTGAGGG CGCTGCGGGG GCTCCAGCCC 2580
AGGTTCACGG ACGGGCAGAG ACAGGAGCTG CAGGACGTCC ACCCGTGGAT GCGGTCAGGC 2640
GGCCTGCCCG CCGCCCTCGA CGTGCCGGAA TGTGTTTACT GTGGAAACGA GGGGAAAGGC 2700
GGCATTGGTG TGCCATCTGA GGAACACCTC CCTGCTCCGG GGCTCAGCGA AGTGGCGGAC 2760
ACCAAGGAGG AGGGAAGCGG ACCCCCCCTG AGTCACAGAA ACCGGGAGCA GACGTAGCGC 2820
CCGGCCCGAG AGCCCCGACC GGCCTCCGGC GGCGCTGCGC ACAGAGAGGT CTTCACATTC 2880
GTTCCAAAGA AGTGGACGGA TGTAACTACA TGGCTTTTTT TGTTTTAGAA AAAAAACCAT 2940
CATTTTTTGA AGGGGTGATT TAGAACTGTG GTGGAGTTGG AAAGCTTTTG TTATATTGAA 3000
GATATAAACG TGGAGGTGTT CCCGCCGTGG CACAGTCTTG TCACTGCTGT GGCACAGGTC 3060
ACAACCGTGG TGCCCATTTG AGCCCTGGCC GGGGAACTTC TACATGCCGC GGGTGAGGCC 3120
CAAAGATACA TAAAAAAGAA ATAAAATATA AATACGGAGT TTTAGGGGAC CGGGGGGAGA 3180
GAGTTTCCTT ATTGTCTAAC TTGAGAAAGA CTGACTGTCT GCAGAAGTGC GGGGCCTGAG 3240
CCATCCCAGG GGTCCTGAGA GAGCGCTGAG GCCTCTTCCC AGGGCACCAG GGCCCGCTGG 3300
CTTCCGGTGA GTTGTCCCGG GGCGTCATAC CAGGCTAGGC TGTGACCTAC AGCTGAGAAG 3360
CCAGGGGTGA CTTTGAGCTG AGGGCCAGGG CTCCCAAGAG CTTCGCCAGG CTGTTTGGAT 3420
CAGATCAAAT TCTGTCCTCT GGGAGAGGGG GTGGCTTTTT CTCTAAATTA GTCAGACTAG 3480
ATGTTTTTAA AACATACCAA GTGGAGGAGA CCACAGTCTC TCCTGATTTT CTTTGAAAAT 3540
GTTTTGCATT AAATGGAAAT GTTTTGCATT AAGTGAAGCT GGGAGTTCCC TTGTGGCACA 3600
GCAGGTTAAG GACCAGCAGC ATTGTCACTG CCGTGCCTGG GGTCGCTGCT GCGGCACAAG 3660
TTTGATCCCT GGCCTGGGAA CTTCCGTAAG TTGCCAATGG AAGGCCAAAA TAATAATAAT 3720
AATAATAATA TAATAATAAA AATAAATGGT GTGAAGCATA GTTTGGCAAG CCAGCAGCTT 3780
CAGCTTCAAG TGTGGTAGTG GCAAATATTT CAACCTGATG TAGCTTACGT TTGGGGTGAA 3840
CAAAGTTGAA ATGCTCACTC TGGACTAAAG AAGCCTCATG GTTTGTGTGA CCGACTCTGC 3900
CATAGAAATA CACATCAACA GAAATACATG GACCCTTCTG TCTATTGCGC CATCACGCCT 3960
GGGTCCTTTT CAGACGGGAT CGCCAATATG TAGATACCAA TGCGTTGTCA GTCATCCCCT 4020
TATCGTGGCT TCCGTCTAAA CCAGGCTTTG ATGGCCACCC TCGAACCCAC TCATGTCTTT 4080
CCTTTGGTTG GCACCTCCCA GACATCAGCC CTGGCCCAGC CAAGCCAGCG CTTTCTCCCC 4140
GCGGACGGCA GCCGCTGACC TGGGGGCTGC ATCTGCATCC CCCAGATTGC TGTGAGTTCC 4200
CCACTCCCAC CGCACCCTGA GCTGGGACCC TGACCCTCAT GCTTCTCACG AGCCTGACCT 4260
CAGTGGTGCA GCTTCCGGTC TGTGCGGGGA CATCCACTAG TGTCACTGGC ACTTTCGGGT 4320
GAATGGGACC CTGGGGGAAG AGCGAGACCA GACTGCCCAC CTTTTGCGAA ACCTCATAGT 4380
GCGTCATTAA TCCCAAAGGT TGTTTGGAAC AACGTTATCT TGGTCCCCAG AGTGAATGAG 4440
CAGGTACCAG TGGCCAGACA ATCGACTTAG GATTGGACGG AGTCTAGAAA CTTACACGGA 4500
AGCAGCCCTT GCCTGGTTCT TTGATGGTGA AGCATCTGCT GGAGGAGGTG TCGTCTCCTT 4560
GTAATCCACT TGGGTTTTGT GGGCCAAACC ATTTTACGCC TGAATATCAA TCCTATTTTT 4620
CATAAACTCA GACACAAAAA GATTTTTTTT TTCATTTACA AAGTAACATC ACCTTCAGAG 4680
GCCCCAGACG AGGGGTAGCC TGTGCGTTTG TGTGGAGATG AGATGCTACT AACGTTCCTG 4740
CCTCTCAAGT CAGATCATTA AGGGATTCGC CGATAGCCAG GGCTGCATTG ATGTCACCTA 4800
AACACAAAAC TGCCAAAACA TTCTCTACTG TCACGAATGT TCCCCGTTGG CATTATCTCA 4860
CTCTTCACAC ATACCTGCCC GTTGTTAACT GTGTAGCTTC AACCGTGTGC TGAGAAGTTG 4920
ACAATAGGAG CATTTGGTGA AATTGTTTAC ATGGCGCCAT GCATCGTCTT ACGTATTCTT 4980
TCGTATGTGT GCTTACGCGG GTGTTATAGA AACTTCTCAA TTTGAAACTG AGCCTTCTTT 5040
TTAATATATT CCTCAAAAGA GATGTAAATA AGCTCTCAGA GTCTGTGTCA TGACATGTTA 5100
GGCCTTGCCG GACAAGTGGT TTGTTCACGC ACAAACCGAA CTTTCTTCAC CCAGTGCAAT 5160
ATGTTTGTTG GACTGCTTGT GTCTTTTTAT GACTTTTTTG CCTTTTAGAA AATTGGTAAA 5220
TAAAGC 5226
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020992Equus caballus63.38 0.00e+00 1181.4
CGD-HoS-021036Homo sapiens (Human)61.34 0.00e+00 1124.4
CGD-MuM-021066Mus musculus (Mouse)55.09 0.00e+00 969.1
CGD-RaN-022186Rattus norvegicus54.4 0.00e+00 974.9