CGDB Gene Information

Tag Content
CGDB ID CGD-ChH-042958
Ensembl Accession ENSCHOP00000000322.1
Ensembl Information ENSCHOG00000000364; ENSCHOT00000000367
Organism Choloepus hoffmanni
NCBI Taxa ID 9358
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 12 ZT 0 LD >10 Predicted from orthologs Q65ZG8
ZT 21 ZT 9 LD 6 duodenum Predicted from orthologs Q8QGQ8
ZT 2 ZT 18 LD 3.17 embryos Predicted from orthologs Q8QGQ8
ZT 6 ZT 18 LD 8 embryos Predicted from orthologs Q8QGQ8
CT 12 CT 0 DD1 3 granulosa cells Predicted from orthologs Q8QGQ8
ZT 3 ZT 18 LD 84.29 pineal glands Predicted from orthologs Q8QGQ8
ZT 23 ZT 11 LD 2.25 spleen Predicted from orthologs Q8QGQ8
CT 4 CT 12 DD2 27 aortic smooth muscle cells Predicted from orthologs O15055
ZT 4 ZT 21 LD 5 human HaCaT keratinocytes Predicted from orthologs O15055
ZT 1 ZT 19 LD 2.67 human hair follicle cells Predicted from orthologs O15055
CT 12 CT 0 LL1 3.43 oral mucosa Predicted from orthologs O15055
CT 3 CT 15 DD2 5 U2OS cells Predicted from orthologs O15055
CT 6 CT 18 DD1 4 SCN Predicted from orthologs O54943
CT 9 CT 3 DD1 3 eye Predicted from orthologs O54943
ZT 19 ZT 7 LD 2.5 amygdala Predicted from orthologs O54943
ZT 12 ZT 4 LD 2 bone Predicted from orthologs O54943
ZT 13 ZT 5 LD 2.4 bone marrow Predicted from orthologs O54943
ZT 18 ZT 6 LD 1.89 brain Predicted from orthologs O54943
ZT 15 ZT 23 LD 3 cortex Predicted from orthologs O54943
ZT 13 ZT 2 LD 10 heart Predicted from orthologs O54943
ZT 13 ZT 1 LD 2.5 hippocampus Predicted from orthologs O54943
ZT 16 ZT 0 LD 25 jejunum Predicted from orthologs O54943
ZT 15 ZT 23 LD 6 kidney Predicted from orthologs O54943
CT 15 CT 3 DD1 4 liver Predicted from orthologs O54943
ZT 16 ZT 4 LD 7 liver Predicted from orthologs O54943
CT 18 CT 6 DD2 10 MEFs Predicted from orthologs O54943
ZT 17 ZT 1 LD 6 megakaryocytes Predicted from orthologs O54943
ZT 18 ZT 6 LD 3 n primary visualcortex (V1) Predicted from orthologs O54943
CT 0 CT 12 DD2 10 NIH-3T3 cells Predicted from orthologs O54943
CT 12 CT 0 DD3 4.79 ovary Predicted from orthologs O54943
ZT 12 ZT 4 LD 5 pituitary gland Predicted from orthologs O54943
CT 12 CT 20 DD3 5 retina Predicted from orthologs O54943
ZT 12 ZT 16 LD 5 retina Predicted from orthologs O54943
CT 12 CT 20 DD3 6 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
ZT 0 ZT 16 LD 2 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
CT 9 CT 21 DD1 6 SCN Predicted from orthologs O54943
CT 8 CT 16 DD1 20 SCN Predicted from orthologs O54943
CT 15 CT 3 DD1 3 skeletal muscle Predicted from orthologs O54943
CT 14 CT 2 DD3 12 suprachiasmatic nucleus (SCN) Predicted from orthologs O54943
ZT 16 ZT 4 LD 9 abdominal adipose tissue Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 anterior cingulate Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 2.05 area postrema Predicted from orthologs Q9Z301
ZT 18 ZT 2 LD 6.38 AV3V Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 14 basolateral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 10 ZT 6 LD 2 caudal ventrolateral medulla Predicted from orthologs Q9Z301
CT 12 CT 8 DD17 4.35 colon Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 3.29 dorsal vagal motor nucleus Predicted from orthologs Q9Z301
ZT 2 ZT 14 LD 1.8 dorsomedial nucleus Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 5.5 entral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 5.7 heart Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 15 hippocampus Predicted from orthologs Q9Z301
ZT 16 ZT 3 LD 57 intestinal jejunal mucosa Predicted from orthologs Q9Z301
CT 16 CT 4 DD17 5 liver Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 8.5 liver Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q9Z301
ZT 0 ZT 12 LD 7 nucleus accumbens shell Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.07 nucleus ambiguus Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.63 paraventricular nucleus Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 4 prefrontal cortex Predicted from orthologs Q9Z301
ZT 12 ZT 8 LD 2.5 PVN Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 rostral agranular insula Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 3.92 SCN Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
Protein Sequence
(Fasta)		 PDAFSLMMGK SAHNPSTSGC XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180
XSFTQECMEE KSFFCRVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240
XXXXXXPRIP PEKRIFTTTH TPSCLFQDVD ERAVPLLGYL PQDLMETPVL LQLHPSDRPL 300
MLAIHKKILQ SGGQPFDYSP IRFRTRNGEY ITLDTSWSSF INPWSRKISF IIGRHRVRVG 360
PLNEDVFAAP RCVEEKALHP GVQELTEQIY RLLLQXXXXX XXXXXXXXXX XXXXXXXXXX 420
XXXXXXXXXX XXXXXXXEVC KNGNKAKSKS HYSRESGEQK RKIVTXXXXX XXXXXXXXXX 480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 540
XXXXXXXXXX XXXXXXXAAA PPEVNSHADV GARFAPLVLP GKAESMASLT SQCSYSSTIV 600
HVGDKKPQPE LEMIEDATSG AESLEGRAGP ALSRSLSPNQ EPLAQLGLTK EVLAAHTLKE 660
EQSFLHKFKE VRRRNVFQSR CHYYPQEGSK GPLSER 696
Nucleotide Sequence
(Fasta)		 CCAGATGCCT TCAGCCTGAT GATGGGGAAG TCTGCGCACA ACCCCTCTAC GAGCGGCTGC 60
AGNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 120
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 180
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 240
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 300
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 360
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 420
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 480
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 540
NATTCCTTCA CTCAAGAGTG CATGGAGGAG AAATCTTTCT TTTGTCGTGT CAGNNNNNNN 600
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 660
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 720
NNNNNNNNNN NNNNNNCCCC TAGAATTCCG CCTGAAAAGA GAATTTTTAC AACCACACAC 780
ACCCCCAGTT GTTTGTTCCA GGACGTGGAC GAAAGGGCAG TCCCCCTCCT GGGCTATCTA 840
CCTCAGGACC TGATGGAGAC CCCCGTGCTC CTGCAGCTGC ACCCCAGCGA CAGGCCCTTG 900
ATGCTCGCCA TCCACAAGAA GATCCTGCAG TCGGGCGGGC AGCCTTTCGA CTACTCTCCC 960
ATTCGGTTCC GCACCCGCAA CGGGGAGTAC ATCACGCTGG ACACCAGCTG GTCCAGCTTC 1020
ATCAACCCGT GGAGCCGGAA GATTTCCTTC ATCATCGGGA GACACCGAGT CAGGGTGGGC 1080
CCTTTAAACG AGGACGTGTT TGCGGCTCCC AGGTGCGTGG AGGAGAAGGC CCTGCACCCT 1140
GGCGTTCAGG AGCTCACGGA GCAGATCTAC AGGCTGTTGC TGCAGNNNNN NNNNNNNNNN 1200
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1260
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NGAAGTTTGT 1320
AAAAATGGTA ACAAGGCCAA AAGCAAAAGT CATTATTCTC GTGAATCTGG AGAACAAAAG 1380
AGAAAAATTG TAACAGNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1440
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1500
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1560
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 1620
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNG GGCGGCGGCG 1680
CCCCCGGAGG TGAACAGCCA CGCAGACGTG GGTGCTCGCT TCGCCCCCCT GGTGCTGCCC 1740
GGCAAGGCGG AAAGCATGGC GTCCCTCACC AGCCAGTGCA GCTACAGCAG CACCATCGTG 1800
CACGTCGGGG ACAAGAAGCC GCAGCCGGAG CTAGAAATGA TAGAAGATGC CACGAGTGGG 1860
GCCGAGTCCC TGGAGGGCCG GGCCGGCCCT GCCCTGAGCC GCAGCCTCAG CCCCAACCAG 1920
GAGCCCTTGG CGCAGCTGGG CCTCACCAAG GAAGTGCTGG CGGCTCACAC CCTGAAGGAG 1980
GAGCAGAGCT TTCTGCATAA GTTCAAGGAA GTAAGGAGAC GCAACGTTTT CCAGTCTCGC 2040
TGCCATTATT ACCCACAAGA AGGATCCAAG GGGCCGCTGA GCGAGCGA 2088
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-CaE-021686Caenorhabditis elegans29.32 6.00e-13 73.17
CGD-GaG-021834Gallus gallus65.42 1.50e-76 283.9
CGD-HoS-021036Homo sapiens (Human)61.62 2.90e-93 341.3
CGD-MuM-021066Mus musculus (Mouse)57.6 1.90e-83 308.1
CGD-RaN-022186Rattus norvegicus57.95 1.10e-84 311.6
Gene Ontology

GO:0005515--protein binding