CGDB Gene Information

Tag Content
CGDB ID CGD-LoA-040113
Ensembl Accession ENSLAFP00000009202.4
Protein Name PER2
Ensembl Information ENSLAFG00000010995; ENSLAFT00000011002
Organism Loxodonta africana
NCBI Taxa ID 9785
Circadian Information
Phase Amplitude
(FOLD)		 Tissue/Cell Evidence
Peak Trough External
condition
ZT 6 ZT 18 LD 5 skeletal muscle Predicted from orthologs F6ZZH0
ZT 21 ZT 9 LD 6 duodenum Predicted from orthologs Q8QGQ8
ZT 2 ZT 18 LD 3.17 embryos Predicted from orthologs Q8QGQ8
ZT 6 ZT 18 LD 8 embryos Predicted from orthologs Q8QGQ8
CT 12 CT 0 DD1 3 granulosa cells Predicted from orthologs Q8QGQ8
ZT 3 ZT 18 LD 84.29 pineal glands Predicted from orthologs Q8QGQ8
ZT 23 ZT 11 LD 2.25 spleen Predicted from orthologs Q8QGQ8
CT 4 CT 12 DD2 27 aortic smooth muscle cells Predicted from orthologs O15055
ZT 4 ZT 21 LD 5 human HaCaT keratinocytes Predicted from orthologs O15055
ZT 1 ZT 19 LD 2.67 human hair follicle cells Predicted from orthologs O15055
CT 12 CT 0 LL1 3.43 oral mucosa Predicted from orthologs O15055
CT 3 CT 15 DD2 5 U2OS cells Predicted from orthologs O15055
CT 6 CT 18 DD1 4 SCN Predicted from orthologs O54943
CT 9 CT 3 DD1 3 eye Predicted from orthologs O54943
ZT 19 ZT 7 LD 2.5 amygdala Predicted from orthologs O54943
ZT 12 ZT 4 LD 2 bone Predicted from orthologs O54943
ZT 13 ZT 5 LD 2.4 bone marrow Predicted from orthologs O54943
ZT 18 ZT 6 LD 1.89 brain Predicted from orthologs O54943
ZT 15 ZT 23 LD 3 cortex Predicted from orthologs O54943
ZT 13 ZT 2 LD 10 heart Predicted from orthologs O54943
ZT 13 ZT 1 LD 2.5 hippocampus Predicted from orthologs O54943
ZT 16 ZT 0 LD 25 jejunum Predicted from orthologs O54943
ZT 15 ZT 23 LD 6 kidney Predicted from orthologs O54943
CT 15 CT 3 DD1 4 liver Predicted from orthologs O54943
ZT 16 ZT 4 LD 7 liver Predicted from orthologs O54943
CT 18 CT 6 DD2 10 MEFs Predicted from orthologs O54943
ZT 17 ZT 1 LD 6 megakaryocytes Predicted from orthologs O54943
ZT 18 ZT 6 LD 3 n primary visualcortex (V1) Predicted from orthologs O54943
CT 0 CT 12 DD2 10 NIH-3T3 cells Predicted from orthologs O54943
CT 12 CT 0 DD3 4.79 ovary Predicted from orthologs O54943
ZT 12 ZT 4 LD 5 pituitary gland Predicted from orthologs O54943
CT 12 CT 20 DD3 5 retina Predicted from orthologs O54943
ZT 12 ZT 16 LD 5 retina Predicted from orthologs O54943
CT 12 CT 20 DD3 6 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
ZT 0 ZT 16 LD 2 retinal pigment epithelium)圧PE) Predicted from orthologs O54943
CT 9 CT 21 DD1 6 SCN Predicted from orthologs O54943
CT 8 CT 16 DD1 20 SCN Predicted from orthologs O54943
CT 15 CT 3 DD1 3 skeletal muscle Predicted from orthologs O54943
CT 14 CT 2 DD3 12 suprachiasmatic nucleus (SCN) Predicted from orthologs O54943
ZT 16 ZT 4 LD 9 abdominal adipose tissue Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 anterior cingulate Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 2.05 area postrema Predicted from orthologs Q9Z301
ZT 18 ZT 2 LD 6.38 AV3V Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 14 basolateral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 10 ZT 6 LD 2 caudal ventrolateral medulla Predicted from orthologs Q9Z301
CT 12 CT 8 DD17 4.35 colon Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 3.29 dorsal vagal motor nucleus Predicted from orthologs Q9Z301
ZT 2 ZT 14 LD 1.8 dorsomedial nucleus Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 5.5 entral nucleus of the amygdala Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 5.7 heart Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 15 hippocampus Predicted from orthologs Q9Z301
ZT 16 ZT 3 LD 57 intestinal jejunal mucosa Predicted from orthologs Q9Z301
CT 16 CT 4 DD17 5 liver Predicted from orthologs Q9Z301
ZT 14 ZT 2 LD 8.5 liver Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q9Z301
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q9Z301
ZT 0 ZT 12 LD 7 nucleus accumbens shell Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.07 nucleus ambiguus Predicted from orthologs Q9Z301
ZT 14 ZT 6 LD 2.63 paraventricular nucleus Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 4 prefrontal cortex Predicted from orthologs Q9Z301
ZT 12 ZT 8 LD 2.5 PVN Predicted from orthologs Q9Z301
ZT 16 ZT 4 LD 2 rostral agranular insula Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 3.92 SCN Predicted from orthologs Q9Z301
ZT 8 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
ZT 12 ZT 20 LD 2 SCN Predicted from orthologs Q9Z301
Descriptionperiod circadian clock 2 [Source:HGNC Symbol;Acc:HGNC:8846](View all)
Protein Sequence
(Fasta)		 MNGYADFPPS PSDPSKGMLE PEPSQAPLQE DMEMSSGCSG NESNEHCSPG QGSDCHDSKG 60
LGMLVGPPDA HQGPNAFSLM MAKSEHNPST SGCSSEQSGK ANMHKELIKT LKELKVHLPA 120
DKKAKGRANT LATLKYALRS VKQVKANEEY YQLLMSSDSH PSSLDVPSYT VEEIESMASE 180
HIVKNVDMFA VAVSLVTGKI VYISNQVASI FHHKRDAFAD AKFVEFLAPH DVSVFHSSTT 240
PYKLPSWGTC SGGDSFSQEC LEEKSFFCRV SVGKTRENEV HYRPFRMTPY LVKVRDPQVP 300
ESQLCCVLLA EKVHSGYEAP RIPPEKRIFT TTHTPNCLFQ DVDQSRRVPL LGYLPQDMPE 360
RPGARCFGPE RRPLSLVLQS GGQPFDYSPI RFRARNGEYI TLDTSWSSFI NPWSRKVAFI 420
IGRHRVRVGP LNEDVFAAQP GVEEKAPDPS IQELTEQIYR LLLQPVPHSG SSGYGSLGSN 480
GSHEHLMSQT SSSDSNGHED ARQRRLEMCK NGNKTKNKSH YSHEPREEKK KPVTELQSRP 540
PLPAKATSAT DKDGPGSGIP KATFPEELAC KAQPACSYQQ VSCLDGVIRY LESCSEAATL 600
KRKYELPADT QALNASDKRR TTGEEAASKV HAALLEPAKV DSHTGVSSHL TSLALPGKAE 660
SVVSLTSQCS YSSTIVHVGD KKPQPELETI EDAASGAESL DGPAGPALSC SLGPEKEPFK 720
KLGLTKEVLA AHTQKEEQSF LHKFRETQKL HTFHSCCRHY LQERPKGQSS ELAAPGLRNA 780
SGMHLSWKKP GKNRKLKSKR AKLRDSSGST ASGGPAPTRA PLTGLNATAW SPSDTSQSSC 840
PAVPFPAPVP TYPLPVFPTP GPVAAAPTAP QAGFVVPTGA QPDFAVEPPP FTAPLAPVMA 900
FVLPSYPFPA VGPSLPQPFF PSQTNFPGHP EMIPVSEPVF PSRTPFPTQP CVCPPAERGQ 960
PASRAATPAT PSSTTGPVGR ASPPLFQSRG SSPLQLNLLQ LEEAPEGGAS AVGTTGTMAV 1020
GPDTKPATSR DHPPKAQPTL NEPSEAQQSD ALSTSSDLLD LLLNEDLCSA TGSALSGSGA 1080
SATSDSLGSR SLGCTVSRSG TGSSDTSHTS KYFGSVDSSE NNHKARVSAD VGENEHLIKY 1140
VLQDPIWLLM ADADNSIMMT YQLPARNLDE VLKEDREKLR VLQKFQPQFT EAQKLELREV 1200
HPWVQVGGLP AAMDVEDCVY CENKGKGNFC APYEEDIPAL GLSKATDTKE EE 1252
Nucleotide Sequence
(Fasta)		 ATGAATGGGT ACGCTGACTT TCCTCCCAGC CCCAGTGACC CCTCCAAGGG CATGCTGGAA 60
CCCGAGCCCA GCCAAGCCCC ACTCCAGGAA GACATGGAGA TGAGCAGTGG CTGCAGCGGA 120
AATGAATCCA ATGAGCACTG CTCCCCAGGG CAGGGCAGTG ACTGTCACGA CAGCAAGGGA 180
CTGGGGATGC TGGTGGGGCC ACCGGACGCC CACCAGGGCC CGAATGCCTT CAGCCTAATG 240
ATGGCCAAGT CTGAACACAA CCCGTCTACA AGCGGTTGCA GCAGTGAGCA GTCTGGCAAA 300
GCCAACATGC ATAAAGAGCT GATAAAGACC CTGAAGGAGC TGAAGGTCCA CCTTCCTGCA 360
GACAAGAAGG CCAAAGGGCG GGCCAACACG CTGGCCACCC TGAAGTACGC CCTGCGGAGC 420
GTGAAGCAGG TGAAAGCTAA CGAGGAGTAT TACCAGCTGT TAATGTCCAG CGACAGCCAC 480
CCCTCCAGTC TGGACGTGCC GTCCTACACG GTCGAGGAGA TCGAGAGTAT GGCCTCTGAG 540
CACATTGTGA AGAACGTGGA CATGTTTGCC GTGGCTGTGT CCTTGGTGAC AGGGAAGATT 600
GTGTACATCT CCAACCAAGT GGCATCCATC TTTCACCACA AGAGAGACGC CTTCGCCGAT 660
GCCAAGTTCG TGGAGTTCTT GGCACCTCAC GATGTCAGCG TGTTCCACAG CTCCACCACC 720
CCATACAAGC TGCCATCCTG GGGCACCTGC AGCGGGGGAG ATTCTTTCTC TCAAGAATGC 780
CTGGAGGAGA AGTCTTTCTT TTGTCGTGTC AGTGTCGGGA AGACCCGCGA GAACGAGGTC 840
CACTACCGTC CGTTCCGTAT GACGCCTTAC CTCGTCAAAG TGCGAGACCC CCAGGTCCCC 900
GAGAGCCAGC TCTGCTGCGT CCTGCTGGCT GAGAAAGTGC ACTCCGGCTA CGAAGCCCCT 960
AGAATTCCTC CTGAGAAGAG AATTTTCACA ACCACGCATA CGCCAAATTG CTTGTTCCAG 1020
GACGTAGATC AAAGTCGGCG GGTCCCCCTC CTGGGCTACC TGCCTCAAGA TATGCCTGAG 1080
AGGCCCGGTG CTCGCTGTTT TGGTCCTGAG CGTCGCCCCC TCTCCTTAGT CCTGCAGTCT 1140
GGCGGGCAGC CTTTCGACTA TTCACCCATC CGCTTCCGCG CCCGGAACGG CGAGTACATT 1200
ACACTGGACA CCAGCTGGTC CAGCTTCATC AATCCCTGGA GCCGGAAGGT TGCCTTCATC 1260
ATTGGGAGGC ACAGAGTCAG GGTGGGCCCC TTGAATGAAG ACGTGTTTGC AGCCCAGCCG 1320
GGTGTGGAGG AGAAGGCCCC GGACCCCAGC ATCCAGGAGC TCACTGAGCA GATCTACCGG 1380
CTGCTGCTGC AGCCGGTGCC CCACAGCGGC TCTAGCGGCT ATGGCAGCCT GGGCAGCAAC 1440
GGGTCCCATG AGCACCTCAT GAGCCAGACG TCCTCCAGCG ACAGCAATGG CCACGAGGAC 1500
GCCCGCCAGA GGAGGCTCGA AATGTGTAAA AATGGTAACA AGACCAAAAA CAAAAGCCAT 1560
TATTCTCATG AACCCAGAGA AGAAAAGAAA AAACCTGTTA CAGAACTGCA GAGTCGTCCC 1620
CCTCTTCCAG CGAAGGCAAC TTCGGCCACA GACAAGGATG GCCCAGGCAG CGGCATCCCC 1680
AAGGCCACCT TCCCTGAGGA ACTGGCATGC AAGGCCCAGC CAGCCTGCTC TTACCAGCAA 1740
GTCAGCTGTC TGGACGGTGT CATCAGGTAC CTGGAGAGCT GCAGCGAGGC TGCCACACTG 1800
AAGAGGAAGT ATGAGCTCCC AGCCGACACT CAGGCCCTGA ATGCCAGCGA CAAGCGCAGG 1860
ACGACAGGAG AAGAGGCAGC CTCGAAGGTG CACGCGGCCC TGCTGGAGCC TGCCAAGGTG 1920
GACAGCCACA CAGGTGTCAG CTCACACCTG ACCTCGTTGG CACTGCCGGG CAAGGCGGAG 1980
AGCGTGGTGT CCCTCACCAG CCAGTGCAGC TACAGCAGCA CCATCGTCCA CGTTGGAGAC 2040
AAGAAGCCGC AGCCCGAGCT AGAAACGATT GAAGATGCTG CAAGTGGGGC TGAGTCCCTT 2100
GATGGCCCAG CTGGCCCCGC GCTGAGCTGC AGCCTAGGCC CTGAGAAGGA GCCCTTCAAG 2160
AAGCTGGGCC TCACCAAGGA GGTGCTGGCC GCCCACACAC AGAAGGAAGA GCAGAGCTTC 2220
CTGCACAAGT TCAGGGAGAC ACAGAAGCTC CACACATTCC ACTCCTGCTG TCGTCACTAC 2280
TTACAGGAAA GGCCCAAGGG GCAGTCGAGC GAGCTAGCTG CCCCTGGACT AAGGAATGCT 2340
TCCGGGATGC ATTTGTCATG GAAAAAACCC GGGAAGAACA GAAAGCTCAA GTCCAAGCGG 2400
GCCAAGCTGC GTGACTCGTC TGGGAGCACA GCGTCAGGAG GGCCAGCACC CACCCGCGCC 2460
CCGCTCACAG GCCTCAACGC CACAGCGTGG TCGCCATCCG ACACATCCCA GTCCAGCTGC 2520
CCTGCCGTGC CCTTCCCCGC CCCTGTGCCA ACCTACCCAC TGCCTGTGTT TCCCACGCCA 2580
GGGCCGGTGG CGGCGGCACC CACGGCCCCC CAGGCTGGCT TCGTGGTGCC CACGGGTGCC 2640
CAGCCAGACT TTGCGGTTGA GCCCCCGCCA TTCACAGCCC CCCTGGCTCC AGTCATGGCA 2700
TTCGTGCTGC CCAGCTACCC CTTCCCCGCC GTGGGCCCGA GCCTTCCCCA GCCGTTCTTC 2760
CCCAGCCAGA CTAACTTTCC AGGCCACCCC GAGATGATCC CTGTCTCAGA GCCTGTGTTC 2820
CCTAGTCGGA CCCCGTTCCC CACACAGCCG TGCGTCTGTC CCCCGGCAGA GCGTGGGCAG 2880
CCGGCATCAC GAGCGGCCAC CCCAGCCACC CCGTCGTCAA CCACTGGGCC CGTGGGCCGG 2940
GCATCCCCGC CACTCTTCCA GTCCCGAGGC AGCTCACCCC TGCAGCTCAA CCTGCTGCAG 3000
CTGGAGGAGG CCCCTGAGGG CGGCGCTTCA GCAGTGGGGA CCACAGGGAC CATGGCTGTG 3060
GGGCCCGACA CCAAGCCAGC CACGTCCCGG GACCACCCGC CAAAGGCTCA GCCCACCCTC 3120
AACGAGCCCT CAGAGGCCCA GCAGAGTGAT GCCCTCTCCA CATCCAGCGA CCTGCTTGAT 3180
CTCCTGCTGA ACGAGGACCT CTGCTCGGCC ACGGGCTCAG CCCTGTCGGG AAGTGGGGCC 3240
TCGGCCACCT CGGATTCTCT GGGCTCCAGG TCTCTGGGCT GCACCGTGTC CAGGAGTGGG 3300
ACAGGCAGTA GTGACACAAG TCACACCAGC AAATATTTTG GAAGCGTTGA CTCTTCGGAG 3360
AATAATCACA AAGCAAGAGT GAGCGCCGAC GTGGGCGAGA ACGAGCATCT CATTAAGTAC 3420
GTCCTCCAGG ACCCCATCTG GCTGCTGATG GCCGACGCCG ACAACAGCAT CATGATGACG 3480
TACCAGCTGC CTGCCCGAAA TCTCGACGAG GTCCTGAAGG AGGACAGAGA GAAGCTGAGG 3540
GTTCTGCAGA AATTCCAGCC CCAGTTCACA GAAGCCCAGA AGCTGGAACT TCGTGAGGTC 3600
CACCCCTGGG TACAGGTGGG CGGCCTGCCC GCAGCCATGG ATGTGGAGGA CTGTGTTTAC 3660
TGTGAAAACA AGGGGAAAGG CAACTTTTGT GCACCGTATG AGGAAGATAT TCCTGCTCTG 3720
GGACTCAGCA AAGCCACAGA CACCAAAGAG GAAGAA 3756
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-EqC-020992Equus caballus65.3 0.00e+00 1521.5
CGD-GaG-021834Gallus gallus50.82 0.00e+00 1150.6
CGD-HoS-021036Homo sapiens (Human)67.64 0.00e+00 1667.9
CGD-MuM-021066Mus musculus (Mouse)61.88 0.00e+00 1517.7
CGD-RaN-022186Rattus norvegicus61.1 0.00e+00 1501.9
Gene Ontology

GO:0005737--cytoplasm
GO:0005634--nucleus
GO:0005515--protein binding
GO:0005654--nucleoplasm