CGDB Gene Information


Tag Content
CGDB ID CGD-GaA-028674
Ensembl Accession ENSGACP00000007489.1
Protein Name PER2 (1 of many)
Ensembl Information ENSGACG00000005662; ENSGACT00000007508
Organism Gasterosteus aculeatus
NCBI Taxa ID 69293
Circadian Information
Phase Amplitude
(FOLD)
Tissue/Cell Evidence
Peak Trough External
condition
ZT 12 ZT 0 LD 30 abdominal adipose tissue Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 11 basolateral nucleus of the amygdala Predicted from orthologs Q8CHI5
CT 12 CT 20 DD17 6.25 colon Predicted from orthologs Q8CHI5
ZT 18 ZT 6 LD 2 decidua Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3.5 entral nucleus of the amygdala Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 8 hippocampus Predicted from orthologs Q8CHI5
ZT 9 ZT 0 LD 48 intestinal jejunal mucosa Predicted from orthologs Q8CHI5
CT 12 CT 0 DD17 16.67 liver Predicted from orthologs Q8CHI5
ZT 16 ZT 4 LD >5 mammary gland (pubescent female F344 rats) Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 8 nucleus accumbens core Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 7 nucleus accumbens shell Predicted from orthologs Q8CHI5
CT 20 CT 0 DD1 1.71 PC12 cell Predicted from orthologs Q8CHI5
ZT 0 ZT 16 LD 7.5 prefrontal cortex Predicted from orthologs Q8CHI5
ZT 4 ZT 16 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 20 ZT 8 LD 15 SCN Predicted from orthologs Q8CHI5
ZT 4 ZT 20 LD 3 SCN Predicted from orthologs Q8CHI5
ZT 8 ZT 0 LD 4.76 uteri Predicted from orthologs Q8CHI5
ZT 8 ZT 20 LD 7 ventral tegmental area Predicted from orthologs Q8CHI5
Descriptionperiod circadian clock 2 [Source:HGNC Symbol;Acc:HGNC:8846](View all)
Protein Sequence
(Fasta)
SSGNGKDSGL QSSGSNKSRS SNSHSSSPPS SSNAFSLVSC EQDNPSTSGC SSELSAKART 60
QKELFKTLKE LKMQQPAEKR SKGKPSTVNA LKYALRCVKQ VKANEEYYQM LKISSQPPGF 120
DVSSYTIQEI NSITSEYTLK NNDVFAVAVS LVTGKIVYIS EQAASILNCK RQVFKNATFV 180
EFLAPQDVSV FYSFTAPYRL PSWSMCTGAD SSPTKCMQEK SFFCRISGGK ERAGHLQYYP 240
FRMTPYLMKV QDAELGEEQF CCLLLAERVH SAYEAPRIPT DKRIFTTTHT PNCVFQDVDE 300
RAVPLLGYLP QDLIGTPVLL NLHPSDRPLM LAVHRKILQY VGQPFDHSSV RFCARNGEYV 360
TIDTSWSSFV NPWSRKVSFV IGRHKVRMGP VNEDVFAAPA FHGGKIVDSD IQEMSEKIHR 420
LLLQPVHHLG SSGYGSNASR EPLVSISSSS ESNATTAEEA NKANKAKPPR TFQEICKGVH 480
MLKNQDSQGA PRSPPLPPSP SKPEQRRSAD SEFRFISLNS NDAPERLCAA SAASVEDQTV 540
CSYQQISCLD SVIRYLEGCN VPITAKRKYQ FSNNNTTSSN SDDEKKGSED CMQVSRDTSQ 600
GCTHSRARRT RKRPGGPLAP PSKAASVVSV TSQCSYSSTI VHVGDKKPQP ESEIMEDVAE 660
SPAPPALQVS AVSPTSQEEE AYKRLGLTKQ VLAAHTQKEE QAFLHNARSL QEDCFTHLHK 720
QGGPASAAGL SGLRRATKLG ATKGRALAKR GSRNRSPEPP GEHPERLPTR AAGPATRSNT 780
PAPAASAQAP CPDPSPFTGF GEGPSGQAPP AAAPLAAPIV APVVALVLPN YLLTQMGQAP 840
RSLAGGPPAS TAELREAAAA SRPSTPGPGA REPTASPPLF ESRCSSPLQL NLLSMEEGQR 900
SVERQDGAAR SGAAAAAGRE TGNHQQLTAR RLLLQAPGDG AQSDSSSCDL LDILLQEDSR 960
SATGSATSSS TGSGSGSAGG ASGSGTGQSR CELNLDIRWT GSSNTSKYFG SMDSLEPDGE 1020
TFIKYLLQEP LWLVMANADE KVMMTYQMPP RDIRRVLRED KERLRQMQKS QPHFSFDQRR 1080
ELVEEHPWMR GRGLPAAIDV KECVYCEDAA PAPVEENLPH MDMGELGQEL SREG 1134
Nucleotide Sequence
(Fasta)
TCGAGCGGCA ACGGCAAGGA CTCCGGCCTC CAGTCCTCGG GGAGCAACAA GAGCCGCAGC 60
TCAAACTCTC ACAGCTCGTC GCCGCCGAGC AGCTCCAACG CCTTCAGCCT GGTGAGCTGC 120
GAGCAGGACA ACCCGTCCAC CAGCGGCTGC AGCAGCGAGC TGTCGGCCAA AGCTAGGACA 180
CAGAAGGAGC TTTTCAAGAC GCTCAAGGAG CTGAAGATGC AGCAGCCGGC GGAGAAGCGG 240
AGCAAAGGGA AACCCAGCAC GGTGAACGCG CTGAAATACG CGCTGCGCTG TGTCAAACAG 300
GTGAAAGCTA ATGAGGAGTA CTATCAGATG CTGAAGATCA GCAGCCAGCC GCCGGGGTTT 360
GACGTCTCAT CCTACACCAT CCAGGAAATC AACAGCATCA CCTCTGAATA CACCCTTAAA 420
AACAATGATG TTTTCGCCGT AGCCGTCTCG CTCGTCACGG GGAAAATAGT TTACATCTCG 480
GAGCAGGCGG CCTCCATCTT GAACTGCAAG CGGCAGGTGT TTAAAAACGC CACGTTCGTG 540
GAGTTCCTGG CGCCGCAGGA CGTCAGCGTG TTCTACAGCT TCACCGCGCC GTACCGCCTG 600
CCCTCCTGGA GCATGTGCAC CGGAGCAGAT TCGTCTCCCA CGAAGTGCAT GCAGGAGAAA 660
TCCTTCTTCT GCCGCATCAG TGGTGGAAAG GAGCGTGCTG GACACCTGCA GTACTACCCT 720
TTCCGCATGA CTCCCTACCT GATGAAAGTC CAGGATGCTG AGCTGGGGGA GGAACAGTTC 780
TGCTGCCTCC TGCTGGCCGA GCGGGTGCAC TCTGCTTACG AGGCACCCAG AATCCCCACT 840
GACAAGCGCA TCTTTACCAC CACACACACA CCAAACTGTG TGTTCCAGGA TGTGGATGAG 900
AGGGCTGTTC CATTGCTGGG TTACCTGCCT CAGGACCTGA TCGGGACCCC CGTGCTGCTC 960
AATCTGCACC CAAGCGACCG CCCCTTGATG CTGGCTGTGC ATCGGAAAAT TCTGCAGTAC 1020
GTCGGGCAGC CCTTCGATCA CTCCTCCGTC CGCTTCTGCG CCAGGAACGG CGAGTACGTC 1080
ACCATCGACA CCAGCTGGTC CAGCTTCGTC AACCCCTGGA GCCGCAAGGT CTCCTTCGTC 1140
ATCGGCAGGC ACAAAGTCCG CATGGGTCCC GTGAATGAAG ATGTTTTTGC AGCGCCGGCT 1200
TTTCACGGGG GGAAGATCGT GGACTCCGAC ATCCAGGAAA TGAGTGAAAA GATCCACAGG 1260
CTGCTTCTCC AACCGGTCCA CCACTTGGGC TCCAGCGGTT ACGGCAGCAA CGCTTCCCGC 1320
GAGCCGCTGG TGAGCATCAG CTCGTCCAGC GAGAGCAACG CGACCACGGC GGAGGAGGCC 1380
AACAAGGCCA ACAAGGCCAA GCCTCCCAGG ACCTTCCAGG AGATCTGTAA AGGGGTCCAC 1440
ATGCTGAAGA ACCAGGACTC CCAGGGGGCC CCGCGCTCCC CGCCTCTCCC GCCGTCGCCA 1500
TCCAAGCCTG AGCAGAGGAG GAGCGCTGAC AGTGAGTTTA GATTCATATC ACTAAACTCT 1560
AACGATGCGC CTGAAAGACT CTGCGCCGCC TCTGCAGCCA GCGTGGAGGA CCAGACTGTC 1620
TGCTCCTACC AGCAGATCAG CTGCCTCGAC AGCGTCATCA GGTACCTGGA AGGCTGTAAC 1680
GTCCCCATCA CAGCGAAGAG GAAGTACCAG TTCTCCAACA ACAACACCAC CTCCTCCAAC 1740
TCGGACGACG AAAAGAAGGG CTCTGAGGAC TGCATGCAGG TGTCTCGGGA CACAAGCCAA 1800
GGCTGCACGC ACAGCCGGGC CCGCCGAACA CGAAAGCGCC CTGGAGGCCC GCTGGCGCCG 1860
CCCAGCAAGG CGGCGAGCGT GGTGTCCGTC ACCTCGCAGT GCAGCTACAG CAGCACCATC 1920
GTCCACGTGG GAGACAAGAA GCCTCAGCCC GAGTCTGAGA TTATGGAGGA CGTGGCGGAG 1980
AGCCCCGCGC CCCCGGCGCT GCAGGTCAGC GCGGTGTCCC CGACCAGCCA GGAGGAGGAG 2040
GCCTACAAGC GTCTGGGACT GACCAAGCAG GTGCTGGCCG CGCACACCCA GAAAGAGGAG 2100
CAGGCCTTCC TCCACAACGC CAGGAGCCTC CAGGAGGACT GCTTCACCCA CCTGCACAAG 2160
CAGGGCGGTC CGGCCAGCGC TGCAGGACTG TCTGGGCTGC GGCGTGCGAC CAAACTGGGC 2220
GCCACCAAGG GCCGAGCGCT CGCCAAGAGA GGCAGCCGAA ACAGAAGTCC AGAGCCGCCG 2280
GGTGAGCATC CCGAACGTCT TCCTACCCGG GCCGCGGGGC CGGCTACCCG CTCTAACACC 2340
CCTGCACCTG CAGCCTCAGC TCAGGCCCCC TGTCCTGACC CCTCCCCCTT CACAGGCTTT 2400
GGAGAGGGAC CGAGCGGCCA AGCCCCGCCT GCCGCCGCTC CGTTAGCTGC ACCCATTGTC 2460
GCACCCGTGG TGGCTCTGGT GCTGCCCAAT TACCTCTTGA CCCAAATGGG ACAGGCCCCT 2520
CGCAGCCTGG CCGGCGGGCC ACCCGCATCC ACGGCGGAGC TTAGAGAGGC GGCGGCGGCG 2580
TCACGCCCGT CCACGCCGGG TCCGGGAGCG CGGGAGCCGA CCGCGTCGCC GCCGCTGTTT 2640
GAGTCGCGGT GCAGCTCGCC ACTGCAGCTA AATCTGCTGA GCATGGAGGA GGGGCAGCGC 2700
TCGGTGGAGC GGCAGGACGG CGCCGCCCGC TCAGGGGCAG CTGCGGCAGC GGGGAGGGAG 2760
ACCGGGAACC ACCAACAGCT GACGGCCCGC CGCCTCTTGC TTCAGGCTCC CGGAGACGGC 2820
GCTCAAAGCG ACTCCTCATC CTGCGACTTG CTGGACATCC TGCTGCAGGA GGACTCCCGC 2880
TCCGCGACCG GATCGGCCAC CTCCTCCTCC ACTGGCTCCG GGTCGGGCTC AGCGGGTGGA 2940
GCTTCTGGCA GCGGAACAGG TCAGTCCAGA TGTGAACTTA ACCTTGATAT ACGCTGGACA 3000
GGAAGCAGCA ACACAAGCAA GTACTTCGGC AGCATGGACT CCCTGGAACC CGACGGAGAG 3060
ACTTTCATCA AATACCTCCT CCAGGAGCCC CTCTGGCTGG TGATGGCCAA CGCTGACGAG 3120
AAGGTCATGA TGACGTATCA GATGCCGCCC AGGGACATTC GGAGGGTTCT GCGAGAAGAC 3180
AAGGAGAGGC TGAGGCAGAT GCAGAAGAGC CAGCCTCACT TCTCCTTCGA CCAGCGGCGA 3240
GAGCTGGTGG AGGAGCACCC CTGGATGAGG GGGCGGGGTC TGCCGGCTGC CATCGATGTG 3300
AAGGAGTGCG TGTACTGCGA GGACGCGGCG CCGGCCCCCG TCGAGGAGAA CCTGCCACAC 3360
ATGGACATGG GGGAGCTCGG CCAGGAGCTG AGCCGCGAGG GC 3402
Sequence Source Ensembl
Orthology
CGDB IDSpieces IdentityE-ValueScore
CGD-RaN-021793Rattus norvegicus42.28 0.00e+00 809.7
Gene Ontology

GO:0004871--signal transducer activity
GO:0007165--signal transduction
GO:0005515--protein binding